Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_3553 |
Symbol | |
ID | 6161192 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 3974001 |
End bp | 3975326 |
Gene Length | 1326 bp |
Protein Length | 441 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 641666326 |
Product | putative sigma54 specific transcriptional regulator |
Protein accession | YP_001792572 |
Protein GI | 171060223 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
| |
Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 0.149056 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACGAGCG CCCTGCCCGA ACTGGTGTCC TACCTCGAAG GCCTGCCCGA GCCTCACATC CTGTTCGACC GGCAGTACCG CATCCTGGCG GCCAACGCGG CCTACCGGCG CCAGTTCAGC CCCGACGCCT CGGTGCTGGG GCGCACCTGC CACGAGGTTT CGCACCGTTT CCGCGTGCCC TGCGATCAGG CCGGCGAGAC CTGCCCGCTG GTGCGCGCCC GCGAGTCGGG ACAGCGCGAG CGCGTGCTGC ACCTGCACCA CACCGCACAG GGCGAGGCCT ACGTCGACAT CGAACTCGTG CCCTTGCGCG ATGCCAGCGG CGAGCAGACC TGTTTCATCG AAAAGATGGC GCCGCTGCGC GTGGCCCAGG GCGAGCCTGC CGCCGCAGGC CTGATCGGCC GCTCGCCGGC GTTTGCACGC CTGCTCGAAC AGGTGGCGCG TGTCGGGCCG TCGAACGCCA GCGTGCTGCT GCTGGGTGAA TCGGGCACCG GCAAGGAACT GATCGCCCAC GCCGTGCACG AGGCCAGCGC ACGCGCCGCG CACCCGCTGG TGGTGGTGGA CTGCGCCAGC CTGCCGGAGT CGCTGTTCGA GAGCGAGCTG TTCGGCCACG AACGCGGTGC CTACACCGGC GCCCATGCGG CCCGGCCTGG CTTGGCAGAG GCCGCCAGCG GCGGCACGCT GTTCCTCGAC GAGGTGGGCG ACATCGCGCT GGCGATGCAG GTCAAGCTGC TGCGGCTGCT CGAAAGCGGC ACCTATCGCC GGGTCGGCAG CACGGAGCTG CGCCGCACCG ATCTGCGCGT GGTGGCGGCC ACCCATCGCG ACCTCAAGGC GATGGTGGCG GACGGGCGCT TTCGCGAAGA CCTGTATCAC CGGCTCAGCA CGTTTCCGAT CCGGCTGCCG GCCTTGCGCG AGCGGGCCGG CGACATCGCG CTGCTGGCCG TCGGGCTGCT GGCGCGGGTG GCCCCGCAGC GGCGCCTCGG CCTGTCGCGC CAGGCACTGG CCCGGCTGGG CACGCAGCCC TTTCCCGGCA ATGTGCGCGA GCTGCGCAAC GTGCTCGAAC GCGCCGCCCT GTTCACCGAC GGCACGCTGA TCGACGACCT GCAGATCGAG CAGGCGCTCG CGGCCGACGG GCCCGTCGCA CCGAGGGTGC CGGTGCGTGC AGCGGCCCCG CCAGAGGCCG GCCCCTCGTT GCGTGAGATG GCGAGCGCGC AACTGCAGGC CCGACTCGAC GCCCACCACG GCAGCCGCGC CGAACTGGCG CGCCAGCTCG GCATCAGCGA GCGCTCGCTG TACCGCAAGC TGCGGGCCCT GGCGCCGCGC GAGTGA
|
Protein sequence | MTSALPELVS YLEGLPEPHI LFDRQYRILA ANAAYRRQFS PDASVLGRTC HEVSHRFRVP CDQAGETCPL VRARESGQRE RVLHLHHTAQ GEAYVDIELV PLRDASGEQT CFIEKMAPLR VAQGEPAAAG LIGRSPAFAR LLEQVARVGP SNASVLLLGE SGTGKELIAH AVHEASARAA HPLVVVDCAS LPESLFESEL FGHERGAYTG AHAARPGLAE AASGGTLFLD EVGDIALAMQ VKLLRLLESG TYRRVGSTEL RRTDLRVVAA THRDLKAMVA DGRFREDLYH RLSTFPIRLP ALRERAGDIA LLAVGLLARV APQRRLGLSR QALARLGTQP FPGNVRELRN VLERAALFTD GTLIDDLQIE QALAADGPVA PRVPVRAAAP PEAGPSLREM ASAQLQARLD AHHGSRAELA RQLGISERSL YRKLRALAPR E
|
| |