| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3542 |
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| Symbol | |
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| ID | 6160914 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 3959226 |
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| End bp | 3960167 |
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| Gene Length | 942 bp |
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| Protein Length | 313 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641666315 |
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| Product | RNA polymerase, sigma 32 subunit, RpoH |
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| Protein accession | YP_001792561 |
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| Protein GI | 171060212 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02392] alternative sigma factor RpoH
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.0000381173 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGTCTACCA TGAACCTGTC TGCATCTGCT GCCTCGACCG CCGTCATCGT CCGTGATCCG
TGGGCCCTGG TTCCCTCGCT GGGCAATCTG GACGCCTACA TCAGCGCGGT CAACCGTCTG
CCGCTGCTCA CGCACGAGGA AGAAGTGAGC TTCGCGCGGC GTCTGCGTGA CAGCCAGGAC
GTCGAAGCGG CCGGCCGGCT GGTGCTGTCG CATCTGCGCC TGGTGGTGTC GGTGGCGCGT
CAGTACCTCG GTTACGGCCT GCCGCACGGC GACCTGATCC AGGAAGGCAA CGTCGGCCTG
ATGAAGGCGG TCAAGCGTTT CGACCCCGAG CAGGGCGTGC GCCTGGTCAG CTACGCCATG
CACTGGATCA AGGCCGAGAT CCACGAGTAC GTCCTGAAGA ACTGGCGCGT GGTCAAGCTC
GCCACCACCA AGGCGCAGCG CAAGCTGTTC TTCAACCTGC GCTCGATGAA GCGCCAGCTC
AAGGGCGAAG CCGCCGACGG CGACACCCAT CGCAGCTCGC TGACCGAAGC CGAGATCGAC
ACCGTCGCGC GCGAACTCAA CGTCAAGCGC GAAGAAGTGA TCGAGATGGA GGCGCGTTTC
GCCGGCGGCG ACGTGGCGCT CGAGCCCGGC TCCGACGAGG ACGACGAGAG CTACACGCCG
ATCGCCTACT TGGCCGACGA GCGCCAGGAG CCGACCCGCG CGCTCGAGGC CGCGCACCGC
GACGAACTCG CCGGCCCCGG CCTGCTGCGC GCGCTCGACG CGCTCGACGC CCGCAGCCGC
CGCATCGTCG AGGAGCGCTG GCTGAAGGTC AACGACGACG GCTCGGGCGG CCTGACGCTG
CACGACCTGG CGGCCGAATA CGGCGTCAGC GCCGAACGCA TCCGCCAGAT CGAGGTGGCG
GCGATGAAGA AGATGCGCAA GGCGCTGGTC GAACACGCCT GA
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| Protein sequence | MSTMNLSASA ASTAVIVRDP WALVPSLGNL DAYISAVNRL PLLTHEEEVS FARRLRDSQD
VEAAGRLVLS HLRLVVSVAR QYLGYGLPHG DLIQEGNVGL MKAVKRFDPE QGVRLVSYAM
HWIKAEIHEY VLKNWRVVKL ATTKAQRKLF FNLRSMKRQL KGEAADGDTH RSSLTEAEID
TVARELNVKR EEVIEMEARF AGGDVALEPG SDEDDESYTP IAYLADERQE PTRALEAAHR
DELAGPGLLR ALDALDARSR RIVEERWLKV NDDGSGGLTL HDLAAEYGVS AERIRQIEVA
AMKKMRKALV EHA
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