| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3463 |
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| Symbol | |
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| ID | 6159898 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 3867949 |
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| End bp | 3871950 |
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| Gene Length | 4002 bp |
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| Protein Length | 1333 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 641666238 |
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| Product | multi-sensor hybrid histidine kinase |
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| Protein accession | YP_001792486 |
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| Protein GI | 171060137 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.245922 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTTCAGCA GCCAGTCCGA CGAGCCCCCG CTCCCCCCGC AGATCGATGA CACGACCGCC
TGGCCGGCGC CACGCCCGCG CGCCGGCTGG CAGGGCCTGC TGCTGCTGGG TGCGCTGAGC
TTCGGGCTCG CCACCCTGGC GCTGCTGCTG CTGCGCCAGC CCGAATCGAT CGCCAGCGTC
TGGTGGGCCA ATGCGGTGGC CGCCGGTTTC CTGGTGCGCC ACGCACGCGC CGCCTGGCCG
GGGCTGCTGC TGGTGAGCGC ACTGGCGATC ACGCTGGCCA ACATCGTGCT TGGCAACCCG
GTGATCACCG CGCTGGCCTT CATGCTCGCC AACCTGGTCG AGACCGGCCT GATGGCGCTG
ATGATCGTGC AGGTGCGCTC GCGTCAGCGG CCGTTCGGCG GGCCGTCCAC GCTGCTGGCG
ATGCTGCTGG CCGCGGCCGT GCTGCCGGCC GCAGCCAGCG CCAGCGTCGC CACCGTGCTG
CTCGGCGCGC TGGGCGAACC GGTGCCCGCG GCGATCTGGA CGGTCTGGTT CCAGGGCGCG
GTGCTCGGTG CGGTCGCCAC CTTGACGATG GTGCTCGAAT GGCCGCTCGG TCCCCAGGCG
CAACCCCTGC GCCGGCGCGA TCTGGCGCTG GTGGCCGGTG CCGCGCTGGC CTGTGCGCTG
ATCTCGGCGC TGGCGATCCG CTCGATGCCG CACCCGTTCG TCTACGTGTC GGCGGCGCTG
GTGGTGGCCG CCGTGCAGTT GCCGCTGTGG GGCGCCGGGC TGGTGGTCTT CACCTCGTCC
CTGGCGATGT CGGTGGTGGT CGGGCTCGGC ACGGTGCCGG CCGGCCAGGA TCCCCCGCTG
TTCGCGTCGG GCTGGGTGAC GGTGCTGCCG CTGCTGCTGA CGATGCTGCC GCCGCTGCTG
CTGGCGGCCG CCCAGGCCCG CGGGCGGCGC GACCGTCACC GGCTGGCCAA CAGCGAGGCG
ACCTTCCGCC TGGCGATGGA ACGCTCCGCG CTCGGCATGG CGCTGGTCAC GATCGACGGC
CGGATCCTGC GCAGCAACCC GGCCCTGCAG CAGATGCTCG GTTACGGCGC CGACGAGCTG
GCGCAGATGC GCACCCGCGA GCTGCGCCAC CCCGAGGATC CCGAGCTCGC CGGCAGCGGC
CTGCAGCAGC TCGCCAGCAG CGAGGGCGGG CGCTACAGCG CCGAGCGCTG TTATGCGCAC
CGCGACGGCA GCAAGGTCTG GGTGCAGCTG AGCGCCGCGC TGGTGCGCGA CGAGCGCGGC
CAGGTGCTCT ACACGCTGAT GCAGGTCGAC GACGTCACCG AGCGGCGCGA CCGCCTGGCC
GCGCTGCAGG CCAGCGAGCG CTTCCTGCGC TTCATCGCCG ACAACGTGCC GGGCATGCTG
GCGTACTGGG ATCGCGACGA GCGCTGCGTG TTCGCCAACC GGGCGCACAT CGAGTGGCTC
GGCCATGACC CGACCCGGCC GCCGCAGCCG CGCCTGGCCG ACGTCATCGG GGCCGAGCGC
TACGCGCTCA GCAAGCCGCA CATCCGCGCC GTGCTGGCGG GCGAGCCGCA GCAGTTCGAG
CGCGGCCACA CGGCCCGTGA CGGCAGCCTG GTCGACGCCT GGCTGCAGTA CGTGCCCGAC
ATCGAGGACG GCGTGGTGCG CGGCTTCTTC GTGCAGGTGT CCGACATCAC CGAGCTGAAG
GCGGCGCAGC GCAAGCTCGC CGACGCCAAC GCCGAACTCG CCGCCCGCAC CCGCCAGGCC
GAAAGCGCCA ACGCCGCCAA GAGCGAGTTC CTGGCCAACA TGAGCCACGA GATCCGCACC
CCGATGGCGG CGATCGTCGG CCTGAGCCAC CTGCTCGAGA ACAGCCGCCT CAACCCCGAC
CAGCAGGACC TGCTGCGCAA GATGCGCGGC GCCAGCAAGT CGCTGATGGC GGTGATCGAC
GACGTGCTCG ACCTCTCCAA GATCGAGGCC GGCGAGCTGC GCATCGACCG CAGCGCGTTC
AGCCTGCAGG CCCTGCTCGA CGACCTGCGC GGCCTGATGG CGCTGAGCGC GCACGACCGC
ACCCTCGAAC TGGTGATGCG CTGCGACGCC GGCCTGCCCG ACCAGCTCGA CGGCGACCTG
ATGCGGCTGC GCCAGGTGCT CAACAACCTG CTGTCGAACG CGCTCAAGTT CACCACCGTC
GGCGAGGTGC TGCTGCAGGT CGCGCTGGTG GCGCGCCAGA GCGGGCGCCT GCGCCTGCGC
TTCACGGTGC GCGACAGCGG CATCGGCATC TCGGCGGCCG AGCAGGCGCG GCTGTTCCGG
CCGTTTGCGC AGGTCGACGC CAGCACCACC CGCCGCTACG GCGGCACCGG CCTGGGCCTG
GTGATCTCGC GCCGGCTGGT GCGCCTGATG GGCGGCGACA TCAGCTTGCG CAGCGCGCCG
GGCAAGGGCA GCGAGTTCAG CTTCGATCTC TCGTTCGACG TCGACGAGGC CAGCGTGCCG
GCCGGCGCCG GCGGCGCGCC GATCCACGTG CTGGTGGTCG ACGACCACGC CCTGCAGCGC
GCCGTGCTGT CCGAGGCCGC GGCCAGCCTC GGCTGGCGCG TCGAAGCGGT GGCCAGCAGC
GACGCCGCGA TCGAACGCAC CGTCGCCCAG GCCGCCGCGG GCGCGCCCTT CGACGCGCTG
GTGCTCGACT GGCAGATGCC CGGCCGCGAC GGCCTGGCCA CGCTGGCGCT GCTGCACCGG
CGGCTGGCCG AATGCGCCGC CGACGGCGTG TTCGCCGAGA TGCCGCCGCT GGTCATGACG
GTGGCGCCGA GCGAAGAAGA CGCCTTGCGG CGCGAGCCGG CCGCGGCCTC GATCGATGCC
GTGCTCTGCA AGCCGATCAT GGCGAGCACG CTCGCCAGTG CGGTGGCCGC GGCGCGGGCA
CGTCAGCGCA GCGGCACGGC CTGGCCGGCC GACCCGGCCG CGCAGGCGGC GCAGCGCCTG
CCGCACGTGT GCGTGCTGGT GGTCGAGGAC AACAGCATCA ACCTCGAGAT GGCGCGCCTG
ATCCTCGAGC GCGAGGGCGC CCTGGTCAAC GCCGCCGGCA ACGGCCGCGA GGCGCTCGAC
CTGCTGCAGG CCCGCCCGGA CGCCTTCGAC ATCGTGCTGA TGGACCTGCA GATGCCGGTG
ATGGACGGCT TCGAGGCCGT GCGCCTGATG CGCGAGCGCG CCGACCTGCA GGCCGTGCCG
GTGATCGCGC TGACCGCCGG CGCGCTGCCC AGCGACCGCG AGCGCGCCCA TGCGGTGGGC
ATGAGCGACT TCATCAGCAA GCCGTTCGAG GTCGAACACC TGGTGCGCAC GGTGCGCGCC
CATGTCCAGC GGGTGCGCCG CGAGGTGCTG TCCAGCCACG TGCCGGCCGT GCTGGCGCTG
CCCGCCGACT GGCCGGCGAT CGACGGCATC GACGCGCAGT CGGCGCACGG CCGCATGCTC
GGCGACGAGG CGCTGTTCAA GCGCCTGCTG GCGCGCCTGT TCGACGAGTT CGGCGGCATT
GCCGGCGAGC TGCGCCAGGC GATCGACGCC GGCTTCGTCG AACAGGCGCG CCAGCAGGCG
CACAAGCTGC GCGGCGTCGC CGGCAACCTG GGCGCGCATC CGGTGCACGT CGTGGCGGGC
GCGCTCGAGA CCGTGCTCGA ACAGGTGCCA CGGCACGCCG GCACGCCGCT GAACGCCGAG
CTGATGTCGC GCATCCAGGC CATGCTGGCC GAACTCGGCG CGGCGATGGT GCGCCTGCAG
GTGGCCAGCG CGCCGACCTT GCAGACGCTG CTGCAGCCGC CGCCGCCTCG CCCCGAACGT
GTGGCGCCGC CGCCCACCGC CGGCGAGCTC GACGCGCTGG TGCAGGCCCT GCGCCAGAAC
GACCTGACGG CGCTGCGCCT GTTCAAGGCG CTGTCCGATG CCCTGGCGGG CCAGATCGAA
GGCAAGTCGT TCGCGAACCT GCGCATGTGC ATCGAAGGCC TGCGTTTCGA GCAGGCGCTG
GCCGAGCTGC AGGACGCCGG GCTGATCACG CGCACGCGCT GA
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| Protein sequence | MFSSQSDEPP LPPQIDDTTA WPAPRPRAGW QGLLLLGALS FGLATLALLL LRQPESIASV
WWANAVAAGF LVRHARAAWP GLLLVSALAI TLANIVLGNP VITALAFMLA NLVETGLMAL
MIVQVRSRQR PFGGPSTLLA MLLAAAVLPA AASASVATVL LGALGEPVPA AIWTVWFQGA
VLGAVATLTM VLEWPLGPQA QPLRRRDLAL VAGAALACAL ISALAIRSMP HPFVYVSAAL
VVAAVQLPLW GAGLVVFTSS LAMSVVVGLG TVPAGQDPPL FASGWVTVLP LLLTMLPPLL
LAAAQARGRR DRHRLANSEA TFRLAMERSA LGMALVTIDG RILRSNPALQ QMLGYGADEL
AQMRTRELRH PEDPELAGSG LQQLASSEGG RYSAERCYAH RDGSKVWVQL SAALVRDERG
QVLYTLMQVD DVTERRDRLA ALQASERFLR FIADNVPGML AYWDRDERCV FANRAHIEWL
GHDPTRPPQP RLADVIGAER YALSKPHIRA VLAGEPQQFE RGHTARDGSL VDAWLQYVPD
IEDGVVRGFF VQVSDITELK AAQRKLADAN AELAARTRQA ESANAAKSEF LANMSHEIRT
PMAAIVGLSH LLENSRLNPD QQDLLRKMRG ASKSLMAVID DVLDLSKIEA GELRIDRSAF
SLQALLDDLR GLMALSAHDR TLELVMRCDA GLPDQLDGDL MRLRQVLNNL LSNALKFTTV
GEVLLQVALV ARQSGRLRLR FTVRDSGIGI SAAEQARLFR PFAQVDASTT RRYGGTGLGL
VISRRLVRLM GGDISLRSAP GKGSEFSFDL SFDVDEASVP AGAGGAPIHV LVVDDHALQR
AVLSEAAASL GWRVEAVASS DAAIERTVAQ AAAGAPFDAL VLDWQMPGRD GLATLALLHR
RLAECAADGV FAEMPPLVMT VAPSEEDALR REPAAASIDA VLCKPIMAST LASAVAAARA
RQRSGTAWPA DPAAQAAQRL PHVCVLVVED NSINLEMARL ILEREGALVN AAGNGREALD
LLQARPDAFD IVLMDLQMPV MDGFEAVRLM RERADLQAVP VIALTAGALP SDRERAHAVG
MSDFISKPFE VEHLVRTVRA HVQRVRREVL SSHVPAVLAL PADWPAIDGI DAQSAHGRML
GDEALFKRLL ARLFDEFGGI AGELRQAIDA GFVEQARQQA HKLRGVAGNL GAHPVHVVAG
ALETVLEQVP RHAGTPLNAE LMSRIQAMLA ELGAAMVRLQ VASAPTLQTL LQPPPPRPER
VAPPPTAGEL DALVQALRQN DLTALRLFKA LSDALAGQIE GKSFANLRMC IEGLRFEQAL
AELQDAGLIT RTR
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