| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3439 |
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| Symbol | |
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| ID | 6160193 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 3842130 |
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| End bp | 3842942 |
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| Gene Length | 813 bp |
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| Protein Length | 270 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641666214 |
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| Product | ABC transporter-related protein |
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| Protein accession | YP_001792462 |
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| Protein GI | 171060113 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0410] ABC-type branched-chain amino acid transport systems, ATPase component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.0295626 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCACAC CGAACATCCT TCTCAACGTC AACGGCATCG AGGTCATCTA CAACCACGTC
ATCCTGGTGC TCAAGGGCGT GAGCCTGCAG GTGCCCGAAG GCCGCGTGGT GGCGCTGCTG
GGCGGCAACG GCGCGGGCAA GACGACCACG CTGCGTGCGG TCAGCAACCT GCTGGCCGGC
GAGCGCGGCG ACGTCACCAA GGGCAGCATC GAGCTGCGCG GCGAGCGCAT CGAGAAGCTC
AGCACCTCGG ACATGGTCAA CCGCGGCGTG GTGCAGGTGA TGGAAGGCCG GCACTGCTTC
GCCCACCTGT CGATCGAGGA CAACCTGATG ACCGGCGCCT ACACCCGCCG CGACGGCAAG
GCCGCGGTGG CCGAGACGCT GGAGAAGGTC TACAACTACT TCCCGCGCCT GAAGACGCGC
CGCACCAGCC AGGCCGCCTA CACCTCGGGC GGCGAACAGC AGATGTGCGC GATCGGCCGC
GCGCTGATGG CCAACCCGAA GATGGTGCTG CTCGACGAGC CGTCGATGGG CCTGGCGCCG
CAGATCGTCG AGGAGGTGTT CGAGATCGTG AAGGACCTCA ACACCAAGGA ACGCGTGACC
TTCCTGCTGG CCGAGCAGAA CACCAACATC GCGCTGCGCT ACGCCGACTA CGGCTACATC
CTCGAGAACG GCCGCATCGT GATGGACGGC GAGGCCCACG CGCTGCGCGA GAACGAGGAC
GTCAAGGAGT TCTACCTCGG CATGGGCGGC GGCGACCGCA AGAGCTTCAA GGACGTCAAG
AGCTACAAGC GGCGCAAGCG CTGGCTGGCC TAG
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| Protein sequence | MSTPNILLNV NGIEVIYNHV ILVLKGVSLQ VPEGRVVALL GGNGAGKTTT LRAVSNLLAG
ERGDVTKGSI ELRGERIEKL STSDMVNRGV VQVMEGRHCF AHLSIEDNLM TGAYTRRDGK
AAVAETLEKV YNYFPRLKTR RTSQAAYTSG GEQQMCAIGR ALMANPKMVL LDEPSMGLAP
QIVEEVFEIV KDLNTKERVT FLLAEQNTNI ALRYADYGYI LENGRIVMDG EAHALRENED
VKEFYLGMGG GDRKSFKDVK SYKRRKRWLA
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