Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_3437 |
Symbol | |
ID | 6160191 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 3839523 |
End bp | 3840587 |
Gene Length | 1065 bp |
Protein Length | 354 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641666212 |
Product | inner-membrane translocator |
Protein accession | YP_001792460 |
Protein GI | 171060111 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG4177] ABC-type branched-chain amino acid transport system, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.00193702 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGATTTATC GTGAAAACGG TCAGTTCAAG ACCAGCTACC GTGCCGACCA GCAGATCTTC CCGATCCGCC AGGACCGCAT CGCCGTGCTG CTGCTGCTCG CGTTCGCGGC GCTGGTGGTG CCGGCGATCG CGTCCGAGTA CGTCTTCCGC GCCATCCTGA TCCCGTTCCT GATCCTGTCG CTGGCGGCGC TGGGGCTGAA CATCCTGGTC GGCTACTGCG GCCAGATCTC GCTGGGCACC GGCGCCTTCA TGGCGGTGGG CGCGTATGCG GCCTACAACT TCTCGGTGCG CATCGACGGC ATGCCGCTGA TCGCCGCGCT GCTGCTGGGC GGGCTGTGCG CCACCGGCGT GGGCGTGCTG TTCGGCATCC CGAGCCTGCG CATCAAGGGG CTGTACCTGG CGATGGCGAC GCTGGCGGCG CAGTTCTTCA CCGACTGGGC CTTCCTGCGC ATCCGCTGGT TCACCAACGA CTCGTCGTCG GGTTCGGTCA GCGTGGCCGG GCTCAACGTG CTGGGCATCC CGATCGACAC CCCGGTGCAG AAGTACCTGT TCTGCCTGGC CTTCCTGAGC GTCTTCGCGC TGCTGGCCAA GAACCTGGTG CGCGGCAACA TCGGCCGCGA GTGGATGGCG ATGCGCGACA TGGACGTGGC CGCCGCGGTG ATCGGCATCC GGCCGATCTA CGCCAAGCTC ACCGCGTTCG CGGTCAGCAG CTTCATCGTC GGCGTGGCCG GCGGGCTGTG GGGCTTCGTG CACCTGGGCT CGTGGGAGCC GGCGGCGTTC TCGATCGACC GCTCGTTCCA GCTGCTGTTC ATGGTGATCA TCGGCGGGCT GGGCTCGATC ATGGGCAGCT TCTTCGGCGC CGCCTTCATC GTGCTGCTGC CGATCCTGCT CGACAACGCG CCCTACTGGT TCGGCATCCC GATCGACACC GCCACCGCCG CGCACCTGAC GTCGATGATC TTCGGCGCGC TGATCGTGTT CTTCCTGATC GTCGAACCGC ACGGCCTGGC CCGGCTGTGG TCGATCGCCA AAGAGAAGCT GCGGCTGTGG CCCTTCCCGC ATTGA
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Protein sequence | MIYRENGQFK TSYRADQQIF PIRQDRIAVL LLLAFAALVV PAIASEYVFR AILIPFLILS LAALGLNILV GYCGQISLGT GAFMAVGAYA AYNFSVRIDG MPLIAALLLG GLCATGVGVL FGIPSLRIKG LYLAMATLAA QFFTDWAFLR IRWFTNDSSS GSVSVAGLNV LGIPIDTPVQ KYLFCLAFLS VFALLAKNLV RGNIGREWMA MRDMDVAAAV IGIRPIYAKL TAFAVSSFIV GVAGGLWGFV HLGSWEPAAF SIDRSFQLLF MVIIGGLGSI MGSFFGAAFI VLLPILLDNA PYWFGIPIDT ATAAHLTSMI FGALIVFFLI VEPHGLARLW SIAKEKLRLW PFPH
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