Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_3436 |
Symbol | |
ID | 6160190 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 3838575 |
End bp | 3839504 |
Gene Length | 930 bp |
Protein Length | 309 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 641666211 |
Product | inner-membrane translocator |
Protein accession | YP_001792459 |
Protein GI | 171060110 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0559] Branched-chain amino acid ABC-type transport system, permease components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.00170509 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGGCTTTT TCCTGGAAAC CTTGTTCGGC GGCCTGATGG CGGGCATGCT GTATTCGCTG ATCGCGCTCG GCTTCGTGCT GATCTACAAG GCCAGCGGCG TCTTCAACTT CGCGCAGGGC GCGATGGTGC TGTTCGCGGC GCTGGCCATG GCGCGCTTCG CGGAGTGGGC GCCCCAGCTG CTGGGCTTCG ACAACAAGAT CCTCGCCAAC CTGATCGGCT TCGGCATGGC GATGCTGGCG ATGATCGCGG TGGCCTGGGT GATCGAGCGT TTCGTGCTCG GCAAGCTGGT CAACCAGGAA GGCATCACGC TGCTGATGGC CACGCTGGGC ATCACCTACT TCCTCGACGG CTTCGGCCAG ACGCTGTTCG GCTCGGACAT CTACAAGATC GACGTCGGCC TGCCCAAGGA CCCGCTGTTC CTGTTCGAGA GCGTGTTCCA GGGCGGCGTG CTGATCAGCC AGGAGGACCT CTACGCCGCG GTGATCGCCG CCGCGCTGGT GGCCGCGCTG AGCCTGTTCT TCCAGAAGAC CGCCACCGGC CGCGCGCTGC GTGCGGTGGC CGACGACCAC CAGGCGGCGC AGTCGATCGG CATCCCGCTC AGCCGCATCT GGGTCATCGT CTGGTCGGTC GCGGGCTTCG TCGCGCTGGT CGCCGGAATG ATCTGGGGCA GCAAGCTGGG GGTGCAGTTC TCGCTCTCGC TGGTGGCGCT GAAGGCGCTG CCGGTGGTGA TCCTGGGCGG CCTGACCAGC GTGCCCGGCG CCATCATCGG CGGCCTGATC ATCGGCGTGG GCGAGAAGCT CTCGGAGGTC TACATCGGCC CGATGTTCGG CGGCGGCATC GAGATCTGGT TCGCCTACGT GCTGGCGCTG CTGTTCCTGG TCGTGCGGCC GCAAGGCTTG TTCGGCGAGA AGATCATCGA CCGCGTCTGA
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Protein sequence | MGFFLETLFG GLMAGMLYSL IALGFVLIYK ASGVFNFAQG AMVLFAALAM ARFAEWAPQL LGFDNKILAN LIGFGMAMLA MIAVAWVIER FVLGKLVNQE GITLLMATLG ITYFLDGFGQ TLFGSDIYKI DVGLPKDPLF LFESVFQGGV LISQEDLYAA VIAAALVAAL SLFFQKTATG RALRAVADDH QAAQSIGIPL SRIWVIVWSV AGFVALVAGM IWGSKLGVQF SLSLVALKAL PVVILGGLTS VPGAIIGGLI IGVGEKLSEV YIGPMFGGGI EIWFAYVLAL LFLVVRPQGL FGEKIIDRV
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