| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3427 |
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| Symbol | |
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| ID | 6161880 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 3809715 |
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| End bp | 3811976 |
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| Gene Length | 2262 bp |
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| Protein Length | 753 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641666202 |
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| Product | general secretion pathway protein D |
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| Protein accession | YP_001792450 |
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| Protein GI | 171060101 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.0000756806 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACGCAGC GCTCACGCCC CGAGGCGACC CGCCGCACGA AGCTCCACGC CTTGCAGCGA
TGCACCGCGT CCGTCCTGGC CTGTGCGCTG CTGGCCAGCG CGCTGCCGGT GGTGCAGGCC
CAGCAGCCGG CAGCCAGCCA GGGCAGCCGC AAGGGCAAGG AAACAGTCAC GATCAACTTC
GTCAACGCCG AAGTCGAGGC GGTGTCGCGG GCGATGGCCA CCATCGTGAA CCGCCAGATC
ATCGTCGACC CGCGCGTCAA GGGCACGATG ACGCTCTACA GCGAGCAGCC GCTGACGCAG
CGCGAGGCCT TCCTGAACTA CCTGGCGGCG CTGCGCGGCC TGGGCTTCGC GGTGGTCGAC
GTGGCCGGGC TGCTGAAGGT GGTGCCCGAG GCCGAGGCCA AGCTGCAGAC CGGCACGGTG
TCGGTCGGCT CGGTGCTGCG CAAGGGCGAC CAGATCGTCA CCCAGGTGTT CAAGGTCCAG
CACGAGAACG TCAACAACCT GGTGACGGTG CTGCGCCCAC TGATCACGCC CAACAACACC
ATCAACGCCA ACCCGGGCAA CAACAGCCTG GTGATCACCG ACTACGCCGA CAACCTGCAG
CGGCTGGCCA AGATCATCGG CGCGCTGGAC GTGCCGTCCA GCACCGGTGT CGAGGTGATC
GCGCTGCAGC ACGGCGTGGC GTCCGACCTG GCGCCGCTGG TGCAGCGTTT TGCCGACACC
TCCGGCGTGA CCGCGGCCGG TGCGGTGCCC AGTGCCGGCG CGGTGTCGGT GGTGGCCGAT
CCGCGCACCA ACTCGCTGCT GGTGCGCGCG CCCAACGCGG CCCGGCTGGC CGCGGTGATG
GCGGTGATCG ACAAGCTCGA CCGGCCCAGC GCCAACGGCG GGCCGGGCGG CAACATCTAT
GTCGTCTACC TGAAGAACGC CGACGCCACC AAGCTGGCGC AGGTGCTGCG CGCGGCCTAT
GGCGGCGCCG GTGGCGGCTC GAGCGGCGGC TCGGCGGCCA CCGGTTCGCT CGCCAGCGCC
GGCCAGGCCA ATACCGCCGC GGGCGGCACG GCCACCGGCA TGAGCTCGGT GCAGGCCACC
ACGCCGGTGG CGGCGTCGGC CAGCCCGTCG ACCGGCGGTT TCATCCAGGC CGACCCGGCC
ACCAACTCGC TGATCATCAG CGCGCCCGAG CCGGTCTACC GCCAGCTGCG CGGCGTCATC
GACCAGCTCG ACGCACGCCG TGCGCAGGTC TACGTGGAGT CGATGATCGT CAAGATGGAC
GCCACCCAGG CGGCCGAATT CGGCTTCCAG TGGCAGGGCC TGCTGGGCCA GAGCGGCGAC
AGGTACGGGC TGGTCGCCGG CACCAACTTC GGCACCGGCG GCAACAACAT CGTCAACCTG
TCGGTGGGCG CGGCCACCGG CGCCGCGCTG CCCGGCGCGG GCCTGAACGT GGGCCTGCTG
AAAGCCATCA ACGGCGTCTA CACGCTCGGC GCGCTGGCGC GTTTCCTCGA ATCGAACACC
GGCGCCAACG TGCTGTCGAC GCCGAATCTG ATCGCGCTCG ACAACGAGGA GGCCAAGATC
GTGATCGGCC AGAACGTGCC CTTCGTGACC GGCAGCTTCA CCAACACCGG CACCAGCAAC
GGCTCGGCCA ACCCGTTCCA GACCATCGAG CGCAAGGACG TCGGCCTGAC CCTGCGCGTC
AAGCCGCAGA TCGGCGAAGG CGGCACGGTG CGCATGGTGA TCTACCAGGA AAACTCCAGC
GTGGTCGCCA ACACCACCAC CAACAGCGCC GGCCCGACCA CCGACAAGAG CGCGATCGAG
ACCACCGTGG TGGTCGACGA CGGCAGCATC ATGGTGCTCG GCGGCCTGTT GAAGGACGAC
TACGGCAGCG GCGAAGACCG CGTGCCCGGC CTGGCCAGCA TCCCGCTGAT CGGCGGCCTG
TTCCGCAGCG AGAACCGCAA GCGCACCAAG AGCAACCTGC TGGTGTTCCT GCGCCCGGTG
GTGATGCGCA GCCAGCAGGA CGCCAACGCG CTCACGCTCG ACCGCTACGA CGCCATCCGC
GCCCAGCAGA TGAACGAGCA GCCCAAGCCG TCGACGGTGC TGGGCATCAA CGAGTCGCCG
GTGCTGCCCG AGCGCAAGCC GGTGGCTGCG CCGCCCGCCG CGGTGCCATC GTCGAGGGCC
GCACCGGCCC AGCAGGCGGC CCCCGCAGCC GTGCGCGCAC CGACGGCCAC CGAGGGGCCG
CTCGCGCCGG TGGAATGGGG CACGCCGGCC TCCGGCCGCT GA
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| Protein sequence | MTQRSRPEAT RRTKLHALQR CTASVLACAL LASALPVVQA QQPAASQGSR KGKETVTINF
VNAEVEAVSR AMATIVNRQI IVDPRVKGTM TLYSEQPLTQ REAFLNYLAA LRGLGFAVVD
VAGLLKVVPE AEAKLQTGTV SVGSVLRKGD QIVTQVFKVQ HENVNNLVTV LRPLITPNNT
INANPGNNSL VITDYADNLQ RLAKIIGALD VPSSTGVEVI ALQHGVASDL APLVQRFADT
SGVTAAGAVP SAGAVSVVAD PRTNSLLVRA PNAARLAAVM AVIDKLDRPS ANGGPGGNIY
VVYLKNADAT KLAQVLRAAY GGAGGGSSGG SAATGSLASA GQANTAAGGT ATGMSSVQAT
TPVAASASPS TGGFIQADPA TNSLIISAPE PVYRQLRGVI DQLDARRAQV YVESMIVKMD
ATQAAEFGFQ WQGLLGQSGD RYGLVAGTNF GTGGNNIVNL SVGAATGAAL PGAGLNVGLL
KAINGVYTLG ALARFLESNT GANVLSTPNL IALDNEEAKI VIGQNVPFVT GSFTNTGTSN
GSANPFQTIE RKDVGLTLRV KPQIGEGGTV RMVIYQENSS VVANTTTNSA GPTTDKSAIE
TTVVVDDGSI MVLGGLLKDD YGSGEDRVPG LASIPLIGGL FRSENRKRTK SNLLVFLRPV
VMRSQQDANA LTLDRYDAIR AQQMNEQPKP STVLGINESP VLPERKPVAA PPAAVPSSRA
APAQQAAPAA VRAPTATEGP LAPVEWGTPA SGR
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