Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_3416 |
Symbol | |
ID | 6162069 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 3800461 |
End bp | 3801966 |
Gene Length | 1506 bp |
Protein Length | 501 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 641666191 |
Product | threonine dehydratase, biosynthetic |
Protein accession | YP_001792439 |
Protein GI | 171060090 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1171] Threonine dehydratase |
TIGRFAM ID | [TIGR01124] threonine ammonia-lyase, biosynthetic, long form |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.00000175327 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCCCTATC TGCAGCGCAT CCTGAACGCC AAGGTCTACG ACGTCGCGCG CGAGACCGAA CTCGAACTGG CACGCAGCCT GTCGACCCGG CTGGGCAACA CGGTGCTGCT CAAGCGAGAG GACAACCAGC CGGTGTTCAG CTTCAAGCTG CGCGGCGCGT ACAACAAGAT GGTGAACCTG AGCGCCGAAC AGCGCGCTCG CGGCGTGATC TGCGCCTCGG CCGGCAACCA TGCCCAGGGC GTGGCACTGA GTGCGCGGCG CCTCGGCTGC CGGGCCGTGA TCGTGATGCC GGTGACCACC CCGGCGCTCA AGGTCGACGC CGTGCGCACC CTCGGCGGCG AGGTGCTGCT GCATGGCGAC AGCTACTCCG ACGCCTACGA CCAGGCGGTG AAAGTGGCCG CGGACCAGGG CCTGACGTTC GTGCACCCGT TCGACGACCC GGACGTGATC GCCGGCCAGG GCACCATCGG CATGGAGATC CTGCGCCAGC ATCAGGGCCC GATCGACGCC GTGTTCGTCG CCATCGGCGG CGGCGGCCTG ATCTCGGGCG TGGCGGCCTA TCTGAAGTCG GTGCGGCCGG GAATCAAGGT GATCGGCGTG CAGACCACCG ACTCGGACGC GATGGCGCGT TCGGTCGAAG CCGGCAAGCG GGTGCGCCTG ACCGATGTCG GGCTGTTTTC CGATGGCACG GCGGTCAAGC AGGTCGGCAA GGAGACGTTC CGGCTGACGC GGGTGCTGGT CGACGAGTTC ATCCGGGTCG ACACCGACGC GATCTGCGCG GCCATGAAGG ACGTCTTCCA GGACACCCGC TCGATCCTCG AGCCCGCCGG CGCGCTGGGC GTGGCGGCGG TCAAGCAGTA CGTCGAGCGC ACCGGCTGCC GCGACCAGAC GCTGATCGCC ATCACCTGCG GCGCCAACAT GAACTTCGAC CGGCTGCGCT TCGTCGCCGA GCGCGCCGAG ATGGGTGAGG AGCGTGAAGC CCTGTTCGCC GTCACGATCC CCGAGGAGCG CGGTTCGTTC AAGCGTTTCT GCGAGCTGAT CGGCCCGCGC AGCGTGACCG AGTTCAACTA CCGCATCTCC GACGAGCAGA AGGCCCACCT CTTCGTCGGC CTGAGCACCC GCACGCACGG CGAATCGGCG CAGATCGGCG AGCTGTTCCG CGGCCAGGGC TTCGACGCGA TCGACCTCAG CCACGACGAA CTGGCCATCG ATCACATCCG CCACCAGGTC GGCGGGCGCT CGGAGCTGGC GGCCAACGAA CGGCTGTTCC GCTTCGAGTT CCCGGAGCGG CCGGGGGCGC TGATGCGCTT CCTGTCGAGC ATGCACCCGG GCTGGAACAT CAGCCTGTTC CACTACCGCA ACCAGGGCGC CGACTACGGC CGCATCCTGG TGGGCATCCA GGTGCCCAAG GCGGATCGGT CCCGGTTCCG CCAATTTCTC GACACGCTCG CGTATCCCTG CATCGAAGAG ACCGACAACC CGGTGTACCG TTTGTTTCTT CGCTGA
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Protein sequence | MPYLQRILNA KVYDVARETE LELARSLSTR LGNTVLLKRE DNQPVFSFKL RGAYNKMVNL SAEQRARGVI CASAGNHAQG VALSARRLGC RAVIVMPVTT PALKVDAVRT LGGEVLLHGD SYSDAYDQAV KVAADQGLTF VHPFDDPDVI AGQGTIGMEI LRQHQGPIDA VFVAIGGGGL ISGVAAYLKS VRPGIKVIGV QTTDSDAMAR SVEAGKRVRL TDVGLFSDGT AVKQVGKETF RLTRVLVDEF IRVDTDAICA AMKDVFQDTR SILEPAGALG VAAVKQYVER TGCRDQTLIA ITCGANMNFD RLRFVAERAE MGEEREALFA VTIPEERGSF KRFCELIGPR SVTEFNYRIS DEQKAHLFVG LSTRTHGESA QIGELFRGQG FDAIDLSHDE LAIDHIRHQV GGRSELAANE RLFRFEFPER PGALMRFLSS MHPGWNISLF HYRNQGADYG RILVGIQVPK ADRSRFRQFL DTLAYPCIEE TDNPVYRLFL R
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