Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_3413 |
Symbol | |
ID | 6162420 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 3797581 |
End bp | 3798627 |
Gene Length | 1047 bp |
Protein Length | 348 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 641666188 |
Product | outer membrane porin |
Protein accession | YP_001792436 |
Protein GI | 171060087 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
| |
Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.000000336209 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
| |
Sequence |
Gene sequence | ATGAACAAGT CCATGATTGC CCTGGCGGTT CTCGCCGGTT TCGCTGGCGT TGCGTCGGCT CAATCCTCGG TGACTCTGTC GGGCAGCATC GACGCAGGTG TGCGCCGCAT CGACGGCGTG AACGACATGG CCGGTGCCGG TTCGTCGCGC AACAACCTGA CGTTCTCGGG TGTTGAAGAC CTGGGTGGCG GCAACAGCGC CTTCTTCACG CTGAACCATC GTTTCAACGT GCAGAGCGGC ACCCAGAACG GCCAGAATAG CGTTGTCAGC ACGACCGCCG CTGGCCTGCC CAACGCGGCC GACCCGGCTG CTCAGTTCTA CCGCAACGTG TGGGTTGGTC TGAAGAACAA CGCCATCGGC GATCTGCGCC TGGGTCGTTT CCTGTACCCG GTGCAAGAGC TGAACGGCAA CTACGATGCG TTCGGCACCG ACACCGTCGG TTCGACCCAC ACCGGCGGCC TGAAGGCCAA CCTGCGTACC AACAGCTCGG CTTACCTGCG CTCGGCAAAT TTCGCTGGCT TCCAGCTTCA CCTGGCTACC GGCTTCAAGA ACAACGGCCA GACGAACCAA GTCGTCGCCG CCACACCGCC CGCAACTGGC TTCGTGACGG TTGCCAACAC CAAGGCTCCG GTTGGCGCAG CAGCCGTGTT TGCCACTGGC CCGATGTCTG TTGCTCTGGC ATACGACAGC AACGGTGCCG AGCTGACCAC CAAGGCCCTG TACGGTTCCT ATGACCTGGG CGTTGCGAAG CTGATGGCTC AGTACGAAAA GACCGACGTG AACGTTGCTC AGACTGCATC TGACAAGCGT TACTCGTTCA GCGCGACGAT TCCGGTCGGT GCACTGAGCA AGGCCAAGGT CGGCTACCTG CACATCGACG ACACCACCAA GGCTGGTACG CAGAGCAAGT TCGGTGCTGG CTTCGACTTC GGTCTGTCCA AGCGCACGAC GGTTTACACC GACGTGGCCA AGCTGCGTGG CGACGAAGGC CTGACCACCA ACAACAAGAA GGTTCGCTTC GACATCGGCG TCAACCACAA GTTCTGA
|
Protein sequence | MNKSMIALAV LAGFAGVASA QSSVTLSGSI DAGVRRIDGV NDMAGAGSSR NNLTFSGVED LGGGNSAFFT LNHRFNVQSG TQNGQNSVVS TTAAGLPNAA DPAAQFYRNV WVGLKNNAIG DLRLGRFLYP VQELNGNYDA FGTDTVGSTH TGGLKANLRT NSSAYLRSAN FAGFQLHLAT GFKNNGQTNQ VVAATPPATG FVTVANTKAP VGAAAVFATG PMSVALAYDS NGAELTTKAL YGSYDLGVAK LMAQYEKTDV NVAQTASDKR YSFSATIPVG ALSKAKVGYL HIDDTTKAGT QSKFGAGFDF GLSKRTTVYT DVAKLRGDEG LTTNNKKVRF DIGVNHKF
|
| |