Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_3410 |
Symbol | |
ID | 6162417 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 3793901 |
End bp | 3795169 |
Gene Length | 1269 bp |
Protein Length | 422 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641666185 |
Product | diaminopimelate decarboxylase |
Protein accession | YP_001792433 |
Protein GI | 171060084 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0019] Diaminopimelate decarboxylase |
TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.0000272348 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACCCTTC CTGGCGCCCC TCACCTCGCC CGCCGCGGCC GCGACCTCTA TCTCGAAGAC TGCCAGCTGG CCACGCTGGC GCAGCAGCAC GGCACGCCGC TGTACGTCTA CTCGCAGGCC TCGATGCTCG ATGCGCTGGC CGCCTACCAG CGCGCACTCG CCGGCCGGCC GCACCTGATC TGCTATGCGA TGAAGGCCAA TTCGAGCCTC GCCGTGCTGC AGACCTTCGC CCGCGCCGGC TGCGGCTTCG ACATCGTCTC CGGCGGTGAA CTGCAGCGCG TGCTGGCGGC TGGCGCGAGC GCCTCGAAGG TGGTGTTCTC GGGCGTCGGC AAGACCCGCA CCGAGATGCG CCAGGCGCTC GAAGCCGGCG TGCGCTGCTT CAACGTCGAA AGCGAAAGCG AACTGGCGCT GCTGTCGCAG GTGGCGGTCG AGCTGGGCGT GCGTGCGCCG GTCAGCCTGC GCGTCAACCC CGATGTCGAC GCCGGCACTC ACCCCTACAT CTCGACCGGC CTGAAGGGCA ACAAGTTCGG CATCGCGCAC GAGCAGGCGC TGGCGGTCTA TCGGCACGCC GCGCAACTGC CCGGCATCGC GGTGCGCGGC ATCGACTGCC ACATCGGCTC GCAGCTCACC GAGGTGGCGC CGTTTCTCGA TGCACTCGAC CGCATCCTGG ATCTGGTCGA GGCCATCGAG GCCGCCGGCA TCACGCTGCA CCACCTCGAT CTGGGCGGCG GCCTGGGCAT CACCTACACC GACGAAACCC CGCCCAGCGC CGACGAACTG ATCGCCCAGC TGCTCGCTCG CATCGACGCC CGTGGCCACG GCCACCGAGA AATCGTCTTC GAACCTGGCC GCTCGCTGGT CGGCAACGCC GGCGTGCTGC TCACCGAGGT GCTTTATCTC AAGCCGGGCG AGACCAAAAA CTTCTGCATC GTCGACGCCG CCATGAACGA CCTGATGCGC CCGGCCATGT ACGAGGCCTG GATGGGCATC GTGCCGTGCA CCGAACGCGA CGCCCCTGCC GTCACCTGGG ACGTGGTCGG CCCGGTCTGC GAGTCGGGCG ACTGGCTGGG ACGCGAGCGC GAACTGGCGG TCGCGCCCGG CGATCACCTG GCGATCCTGT CGGCCGGCGC CTACGGCATG GCGATGGCCA GCAACTACAA CACCCGCGGC CGCGCCGCCG AGGTGATGGT GCGCGGCCAC CAGGCCACGC TGATCCGGCG CCGCGAATCG GCCGCCGAGC TGTACGCCAA CGAGCGCCTG ATCGACTGA
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Protein sequence | MTLPGAPHLA RRGRDLYLED CQLATLAQQH GTPLYVYSQA SMLDALAAYQ RALAGRPHLI CYAMKANSSL AVLQTFARAG CGFDIVSGGE LQRVLAAGAS ASKVVFSGVG KTRTEMRQAL EAGVRCFNVE SESELALLSQ VAVELGVRAP VSLRVNPDVD AGTHPYISTG LKGNKFGIAH EQALAVYRHA AQLPGIAVRG IDCHIGSQLT EVAPFLDALD RILDLVEAIE AAGITLHHLD LGGGLGITYT DETPPSADEL IAQLLARIDA RGHGHREIVF EPGRSLVGNA GVLLTEVLYL KPGETKNFCI VDAAMNDLMR PAMYEAWMGI VPCTERDAPA VTWDVVGPVC ESGDWLGRER ELAVAPGDHL AILSAGAYGM AMASNYNTRG RAAEVMVRGH QATLIRRRES AAELYANERL ID
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