| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3405 |
|---|
| Symbol | |
|---|
| ID | 6162837 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 3788111 |
|---|
| End bp | 3788827 |
|---|
| Gene Length | 717 bp |
|---|
| Protein Length | 238 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641666180 |
|---|
| Product | pilus assembly protein PilO |
|---|
| Protein accession | YP_001792428 |
|---|
| Protein GI | 171060079 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3167] Tfp pilus assembly protein PilO |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.152027 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCACGT CCCGTTCCAT CAACATCGAT CTCGAAAGCG TGATGGCGCA GGTCGCCGCG
CAGTTTCGTG ATCTCAATTT CAACGAGCCC GGTCAGTGGC CGCTGCTGCC CAAGCTGGTC
GCCGGGCTGG TCACGGCGGT CTTCGTGGTC GTGCTGGCCT GGTTCGGCCT GCTGTCGGGC
GTCATGGACG AGCTCAACGC CGAAAGCATG CGCGAGCAGA CGCTCAAGGA CGAGTACCGT
TCCAAGCTGG CCCAGGCCAT CAACCTCGAC GAGTTGCGCA AGCAGAAGCT GCAGGTCCAG
GAGTACGTCA CCCAGCTCGA ACGCCAGCTG CCGGGCAAGG CCGAGATGGA TGCCCTGCTG
TCGGACATCA ACCAGGCCGG ACTCGGGCGT GGCCTGCAGT TCGAGCTGTT CCGGCCCGGC
CAGGTGATCG TCAAGGACTA TTACGCCGAG CTGCCGATCG CGGTGCGCGT GACCGGTCGC
TATCACGACA TCGGCGCTTT CGCCTCCGAC GTGGCCAACC TGTCTCGCAT CGTCACGCTG
CACAACCTGG TCATCTCGGG ACTGAATCCG CCCAACACGG CCAGCTCGGC CGCGGCCACC
GGCCAGCTGG CGATGGAGGC CACCGCGCGC ACCTACCGGT ATCTCGATCC GGCCGAAATG
GAGATGCGGC GCCAGTCGGC GGCCGATGCC AAGAAAACCA ACGGAGGCGC GAAGTGA
|
|---|
| Protein sequence | MATSRSINID LESVMAQVAA QFRDLNFNEP GQWPLLPKLV AGLVTAVFVV VLAWFGLLSG
VMDELNAESM REQTLKDEYR SKLAQAINLD ELRKQKLQVQ EYVTQLERQL PGKAEMDALL
SDINQAGLGR GLQFELFRPG QVIVKDYYAE LPIAVRVTGR YHDIGAFASD VANLSRIVTL
HNLVISGLNP PNTASSAAAT GQLAMEATAR TYRYLDPAEM EMRRQSAADA KKTNGGAK
|
|---|
| |