| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3325 |
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| Symbol | |
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| ID | 6163712 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 3700439 |
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| End bp | 3702109 |
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| Gene Length | 1671 bp |
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| Protein Length | 556 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641666100 |
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| Product | alpha amylase catalytic region |
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| Protein accession | YP_001792348 |
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| Protein GI | 171059999 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 59 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAGTT CAATCCAACC CAAGGCGCCC AACAGCGGCT GGTGGCGCAG CGGCGTGATC
TATCAGGTCT ACCCGCGCAG CTATCAGGAC AGCAACGGCG ACGGCATCGG CGACCTGCCC
GGCATCACGC GCCGGCTCGA CCACATCGCG CGGCTCGGTG CCGATGCGGT GTGGCTGTCG
CCAATCTTCA AGAGCCCGAT GAAGGACTTC GGCTACGACG TCAGCGACTA CAACGACATC
GACCCGATGT TCGGCACGCT TTCCGACTTC CGCGTGCTGG TCGACCGTGC GCACGAGCTG
GGCCTGAAGG TCATCATCGA CCAGGTGCTC TCGCACAGTA GCGACCAGCA CCCGTGGTTC
GTCGAGAGCC GCAGCAGTCG CGACAACCCG AAGGCCGACT GGTACGTGTG GGCCGACGCC
CGCGACGACG GCAACCCGCC CAACAACTGG CTGAGCGTCT TCGGCGGCAG CTCGTGGCAG
TGGGACACGC GGCGCAAGCA GTACTACCTG CACAACTTCC TGGCCAGTCA GCCCGATCTC
AACTTCCACA ACCCGCAGGT GCAGGACGCG CTGCTCGCCT CGGTCAAGGC CTGGCTCGAG
TTCGGTGTCG ACGGCTACCG GCTCGACGCC ATCAACTTCT GCTTCCACGA CGCGCAGCTG
CGCAGCAACC CCGGCACCGG CGAGCCCGAC GGCAGCAACC CGACGGTGTC GGCGAGCAAC
CCCTACGCCT GGCAGCAGCA CCTGTACGAC CGCAGCCGGC CCGATGCATT GGGCTTTCTG
CAGCGCCTGC GCGCACTGAC CGACCAGTAC CCCGACACCA TGATGGTCGG CGAGATCGGC
GACGAGTCGG GCATGCTGAT GGTGGCGCAG TACAGCAGTG GTGGCGACAA GCTGCACATG
GGCTATTGCT TCGACCTGCT GGCCGACCGC TGCGACGCGC CCTATGTGCA CGGCGTGGTC
GACAAGTTCG AGCGCGTGGC CGCCACCGCC GATCAGGGCT GGGCCTGCTG GGCCTTGTCC
AACCACGATT GCAAGCGCCT GGCCACCCGC TGGGGCGGGC CGAACCCGCA TCCGAACCTG
CTGCGCCTCG CACCTGCGCT GCAACTGAGC CTGCGCGGCG CCTCGTGCAT CTACCAGGGC
GACGAGCTCG GCCTGCCCGA AGCCGAGGTC GCCTACGAGG ACCTGCAGGA TCCGTACGGC
ATCACGATGT GGCCCGAGTT CAAGGGTCGC GACGGCTGCC GCACGCCGTT CCCTTGGGAT
TCGTCGGCGC CCGACCTCGG CTTTGCCGGC GTGGCGGATC ACGCCAAGCC GTGGCTGCCG
GTGTCGGAGA GCCACCGCAC GCTGGCCGTC AACGCGCAGG AATCCGACCC GTCGGCGCTG
CTGCACCACT ACCGCCACCT GCTGGGCTGG CGGCGTGGCC AGGCCGCGCT GATGAAGGGC
GACCTGACGC TGCTGCCGAT CGACGACCAG GTGCTCGCCT ACGTGCGAAG CCACGGCGGC
GAGCGGCTGC TGTGCGCCTT CAACCTCAGC GCCACCCCGG CCACGCTCGA CCTGAGCGCG
GGCGAGACCA TCGCCGAAGT CCTGCACGAC AGCGGCGCGC GCGGCGCGGC GGTGCAAGGC
CGGCGCGTCA GCTTCGAGCC CTACGGCGTG CTGTTCGCCC GCCTGGCCTG A
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| Protein sequence | MSSSIQPKAP NSGWWRSGVI YQVYPRSYQD SNGDGIGDLP GITRRLDHIA RLGADAVWLS
PIFKSPMKDF GYDVSDYNDI DPMFGTLSDF RVLVDRAHEL GLKVIIDQVL SHSSDQHPWF
VESRSSRDNP KADWYVWADA RDDGNPPNNW LSVFGGSSWQ WDTRRKQYYL HNFLASQPDL
NFHNPQVQDA LLASVKAWLE FGVDGYRLDA INFCFHDAQL RSNPGTGEPD GSNPTVSASN
PYAWQQHLYD RSRPDALGFL QRLRALTDQY PDTMMVGEIG DESGMLMVAQ YSSGGDKLHM
GYCFDLLADR CDAPYVHGVV DKFERVAATA DQGWACWALS NHDCKRLATR WGGPNPHPNL
LRLAPALQLS LRGASCIYQG DELGLPEAEV AYEDLQDPYG ITMWPEFKGR DGCRTPFPWD
SSAPDLGFAG VADHAKPWLP VSESHRTLAV NAQESDPSAL LHHYRHLLGW RRGQAALMKG
DLTLLPIDDQ VLAYVRSHGG ERLLCAFNLS ATPATLDLSA GETIAEVLHD SGARGAAVQG
RRVSFEPYGV LFARLA
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