| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3323 |
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| Symbol | |
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| ID | 6163394 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 3697462 |
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| End bp | 3699174 |
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| Gene Length | 1713 bp |
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| Protein Length | 570 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641666098 |
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| Product | alpha amylase catalytic region |
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| Protein accession | YP_001792346 |
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| Protein GI | 171059997 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 56 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCACG CATGGTGGAA AGAAAGCGTC GTCTACCAGA TCTACCCGCG CAGCTTCGCT
GACAGCGACG GCGACGGCAT CGGCGACCTC AACGGCATCA CCGCGAAACT CGATCACCTG
AAGACGCTGG GTGTCGACGT GGTGTGGCTG TCGCCGATCT ACCGCTCGCC CAACGACGAC
AACGGCTACG ACATCAGCGA CTACCGCGCC ATCATGGCCG AGTTCGGCAC GATGGCCGAT
TTCGACACCA TGCTGGCCGG CATGCACCAG CGTGGCATCA AGCTGATGAT GGACCTGGTG
GTCAACCACT GCTCGGACGA ACACGCCTGG TTCCAGGCCG CGCGCACGAG CCGCGACAAC
CCGTACCACG ACTACTTCAT CTGGCGCGAC CCCAAGCCCG ATGGCTCGCC GCCCACGAAC
TGGGAGGCCG CCTTCAACGG CTCGGTGTGG GAGTGGAACG AGCCCACCGG CGAGTACTAC
CTGCACATGT TCAGCAAGAA GCAGCCGGAC CTGAACTGGG AGAACCCGCA GGTGCGCGCC
GAGGTGCACG CGCTGATGCG CTTCTGGCTC GACAAGGGCG TCGACGGCTT CCGCATGGAC
GTCATCAACA TGATCTCCAA GCCCTGGCGC GCCGACGGCA GCCTGCCCGA CGCGCCGGTG
GTGCGCGAGG GTTTCCTGCA GCCCGGTTTC GCGCTGACCT GCAACGGCCC GCGCCTGCTC
GAATACTTGC GCGAGATGAA GGCCGAGGTG CTCGACCACT ACGACACCAT CACCGTCGGC
GAGGCGCCGA TGGCGACCAC GCAGCAGGGC CGCGAGATCA GCAACGAGCG CAGCGGCGCG
CTCAACATGC TGTTCCAGTT CGAGCACATG GACCTCGACA GCGGACCGCT CGGCAAGTGG
GATCTCAAAC CGCTCGACCT GCGCGACCTC AAGCGCACCA TGTCGCGCTG GCAGGACGAA
CTGGCGGGCG AGGGCTGGAA CAGCCTCTAC CTGTCCAACC ACGACCAGCC GCGGCCGGTG
TCGCGCTTCG GGGATGACGG CGAGTTCCGC GTGGTGTCGG CCAAGATGCT CGGCACCTGG
CTGCACATGC ACCAGGGCAC GCCCTACGTC TACCAGGGCG AAGAGCTCGG CATGACGAAC
GTGAAGTTCG CCCGCATCGA CGACTACCAG GACATCGAGA TCCTCAACAT GTACCGGGTG
GCCACCACCG AGCGGGGGCA GGACCCGGCG CAGGTGCTGG CCTCGATCCA CGCCAAGGGC
CGCGACAACG CGCGCACGCC GATGCCGTGG ACGGCCGGGC CGAACGCCGG CTTCACCGGC
GGCAAGCCGT GGTTGAAGCT CAATCCGAAC TACCCGCAGA TCAACGCCGA GCAGGCGCTG
GCCGATCCGG ACTCGGTGTT CCATTACTAC CGGCGCCTGA TCGCGCTGCG CCACGCGCAC
CCGATCGTGG TCTACGGCCG CTACGACCTG CTGCTGCCCG AGCACCCGCA CATCTACGCC
TACACGCGCA CGCTCGGCGC CGAGCGCCTG CTGGTGGTGT GCAACTTCAG CCACGGCCAG
CCGGTGTTCG AGCTGCCGGC CGACATCTTC CACAGCGGCA CCGAGCTGAT GATCGCCAAC
TACCCCGTGC CGACCGAGCC GGCGAGCACC GAAGACCTGC GCGCCTTGCG CCTGCGCCCC
TACGAGGCGC GCGTGATCCG CCTGCGCGCC TGA
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| Protein sequence | MKHAWWKESV VYQIYPRSFA DSDGDGIGDL NGITAKLDHL KTLGVDVVWL SPIYRSPNDD
NGYDISDYRA IMAEFGTMAD FDTMLAGMHQ RGIKLMMDLV VNHCSDEHAW FQAARTSRDN
PYHDYFIWRD PKPDGSPPTN WEAAFNGSVW EWNEPTGEYY LHMFSKKQPD LNWENPQVRA
EVHALMRFWL DKGVDGFRMD VINMISKPWR ADGSLPDAPV VREGFLQPGF ALTCNGPRLL
EYLREMKAEV LDHYDTITVG EAPMATTQQG REISNERSGA LNMLFQFEHM DLDSGPLGKW
DLKPLDLRDL KRTMSRWQDE LAGEGWNSLY LSNHDQPRPV SRFGDDGEFR VVSAKMLGTW
LHMHQGTPYV YQGEELGMTN VKFARIDDYQ DIEILNMYRV ATTERGQDPA QVLASIHAKG
RDNARTPMPW TAGPNAGFTG GKPWLKLNPN YPQINAEQAL ADPDSVFHYY RRLIALRHAH
PIVVYGRYDL LLPEHPHIYA YTRTLGAERL LVVCNFSHGQ PVFELPADIF HSGTELMIAN
YPVPTEPAST EDLRALRLRP YEARVIRLRA
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