Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_3299 |
Symbol | |
ID | 6162210 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 3666209 |
End bp | 3667474 |
Gene Length | 1266 bp |
Protein Length | 421 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 641666074 |
Product | extracellular solute-binding protein |
Protein accession | YP_001792322 |
Protein GI | 171059973 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 46 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCGTCT CGTCCCCCCT TCGCCGCAGC CTCGTCGTCC TGGGCCTGGC TGCCCTCGGT GCCAGCGCCG CCCAAGCCCA GACCTCGCTG TCGATGTGGT ATCACGGTGC CGGCAACCCG AAGGAGAAGG AGCTGATGAC GGGGATCATC AGCGACTTCA ACAAGAGCCA GAAGGAGTGG AAGGTCGAGC TGCAGCAGTT CCCACAGGAG GCCTACAACA CCTCGGTGGT GGCCGCCGCG GTGGCCGGCA AGCTGCCTGA CATCCTCGAC GTCGACGGCC CGGTGATGCC CAACTGGGCC TGGTCGAAGT ACCTGCAGCC GCTGGCCCTG CCGGCCGGCG CGACCGACAA GTTCCTGCCC GGCACGATCG GCACCTACAA CGGCAAGGTC TACTCGGTCG GCCTGTGGGA CGCGGCCTGT GCGATGTTTG CCCGCAAGTC GGTGCTGCAG GCCCACAACA TCCGCATCCC GACGCTCGAC AAGCCCTGGA CCAAGGCCGA GTTCGACGCC GCACTCGTGA CGCTGCAAAA GAGCGGCAAG TTCCAGTACC CGATCGACCT GGGCCTGGCC TGGAAGGGCG AGTGGTACTC GTACGCCTTC GGCCCCTTCC TGCAGAGCCA CGGCGGTGAC CTGCTGAACG CGGCTGCGCC CAAGGCCAAC GGCACGCTCA ACGGCCGTGC CGGCGTCGAG TTCGGCACCT GGTGGCAGAG CCTGTTCACG CGCAAGCTGA CCCCGGGCAC CTCGCAGAGC GGCGCCGACC GCGAGACCGG CTTCCTCGAC GGCAAGTACG CGCTGCAGTG GAACGGCAAC TGGGCCGCGC TGCCGGCGCT GAAGAAGTTC GGCGACGACC TGGTCTTCCT GCCGGCGCCC GACTTCGGCA AGGGCCCGAA GATCGGCGCC GCGTCGTGGC AGTTCGGCGT CTCGGCCACC AGCAAGAACG CCAAGGGCGC GAACGCCTTC ATCGCCTTTG CGCTCAAGGA CAAGTACCTG GCGGCCTTCT CCGACGGTAT CGGCCTGATC CCGTCGACCC CGGCGGCCGC GGCGCTGACG CAGAACTACA AGAAGGGCGG CCCGCTGGAG GTGTTCTTCG CGCTGTCGGC CAAGCAGGCC ACGCTGCGCG CGTCGACGCC GGGTTATGCC GGCGCGTCGG GCGAGTTCGA GAAGGCGCTG GCCGACATCG CCAACGGCGG CAAGGTCGCC GATGCACTCG ACAACGCCGC CGACGCGATC GACGCCGACC TGAAGAAGAA CGGCAACTAC CGCTGA
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Protein sequence | MTVSSPLRRS LVVLGLAALG ASAAQAQTSL SMWYHGAGNP KEKELMTGII SDFNKSQKEW KVELQQFPQE AYNTSVVAAA VAGKLPDILD VDGPVMPNWA WSKYLQPLAL PAGATDKFLP GTIGTYNGKV YSVGLWDAAC AMFARKSVLQ AHNIRIPTLD KPWTKAEFDA ALVTLQKSGK FQYPIDLGLA WKGEWYSYAF GPFLQSHGGD LLNAAAPKAN GTLNGRAGVE FGTWWQSLFT RKLTPGTSQS GADRETGFLD GKYALQWNGN WAALPALKKF GDDLVFLPAP DFGKGPKIGA ASWQFGVSAT SKNAKGANAF IAFALKDKYL AAFSDGIGLI PSTPAAAALT QNYKKGGPLE VFFALSAKQA TLRASTPGYA GASGEFEKAL ADIANGGKVA DALDNAADAI DADLKKNGNY R
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