Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_3288 |
Symbol | |
ID | 6162427 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 3651584 |
End bp | 3652861 |
Gene Length | 1278 bp |
Protein Length | 425 aa |
Translation table | 11 |
GC content | 74% |
IMG OID | 641666063 |
Product | FAD-dependent pyridine nucleotide-disulphide oxidoreductase |
Protein accession | YP_001792311 |
Protein GI | 171059962 |
COG category | [C] Energy production and conversion |
COG ID | [COG1251] NAD(P)H-nitrite reductase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 0.325402 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATGCAA GCCGCACACA CAACCCCGAC CGCCCCGCCG CGATGGTGAT CGTCGGCGCC GGCCACGTCG GCGGGCGCGC CGCCCAGCAC CTGCGCGAGC AGGGCTGGGC CGGCGAGATC GTGCTGATCG GCGCCGAGCC GGTGCTGCCC TACGAGCGCC CGCCGCTGTC GAAAGCCGTG CTCAAGGGCG AGATGACGCC CGGACAATGC GCGCTGCGCG CCGCCGCCGA TTACGACCGC GACCGCATCA CGCACATCGT CGCGACGGTG CAGGCCGTCG ACACCGCTGC ACGCAGCGTC ACGCTGGCCG ATGGCCGCGT GATCGCCTAC GCCGCGCTGC TGCTCGCCAC CGGCGGCGTC GCACGCAAGC TCGACATCCC TGGCGCCACC CTGCCCGGCG TGTGCGAGCT GCGCACCCAG GCCGACGCCA TCGCGCTGGC GCCCAGCCTG CAGGCCGGCG CACACCTGCT GCTGATCGGC GGCGGTTTCA TCGGGCTGGA GGTGGCGGCG TCGGCGCGCT CGCGTGGCTG CGAGGTGACG GTGATCGAAG GCGCGCCGCG GCTGCTCGGC CGCGCCGTGC CGGCCAGCAT CGGCGCGCAG GTGCTGGCGC TGCACCGCAG CCAGGGTGTC GACGTGCGGC TGGGCAGCGG CCCGAGCGCA TTCGTACAGC GCGCCGACGG CCGGCTCGAC GTGAGCCTGC AGGACGGCAG CACGCGGGTC GCCGACACCG TCGTGGTCGG CATCGGCATC ACGCCGGCGA CCGAGCTGGC GCGGGCCGCC GGCCTGGCGG TCGAGCGCGG CATCGTCGTC AACGCACAAC TCGCCACCAG CGCCGCGGGC GTCTACGCCG CCGGCGACGT GGCCGAGTTC CCGAGCGCGT TCTCGGGTCA GCTGATCCGC CAGGAAACCT GGCACAACGC CGAGACCCAG GCCCGCACCG CCGCCGTCAA CATGCTCGGC GGCCACGAGG CCTACACGGT CACGCCGTGG TTCTGGTCGG ACCAGTACGA CTGGCAACTG CAGGTCAGCG GCGAGCCGGC GCTGGCCGCG AGCAGCGTGG TGCGCACCTT GGGCGAGGGC TCCGAAGCCG GCGAACTGCA TTTCTACCTC GACGCCGACG GCCGCCTGGT CGGCGCCAGC GGCTGCGGCC CGACCCGCGT GGTGGCCAAG GAACTCAAGC TCGCCCGCAC GCTGGTCGAA CGCGGCGCGC GGCCCACGGC AGCGCAACTG GCCGACCCGG GCGTCAAGCT CAAGGCGCTG CTGTCGACGG CGGCCTGA
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Protein sequence | MDASRTHNPD RPAAMVIVGA GHVGGRAAQH LREQGWAGEI VLIGAEPVLP YERPPLSKAV LKGEMTPGQC ALRAAADYDR DRITHIVATV QAVDTAARSV TLADGRVIAY AALLLATGGV ARKLDIPGAT LPGVCELRTQ ADAIALAPSL QAGAHLLLIG GGFIGLEVAA SARSRGCEVT VIEGAPRLLG RAVPASIGAQ VLALHRSQGV DVRLGSGPSA FVQRADGRLD VSLQDGSTRV ADTVVVGIGI TPATELARAA GLAVERGIVV NAQLATSAAG VYAAGDVAEF PSAFSGQLIR QETWHNAETQ ARTAAVNMLG GHEAYTVTPW FWSDQYDWQL QVSGEPALAA SSVVRTLGEG SEAGELHFYL DADGRLVGAS GCGPTRVVAK ELKLARTLVE RGARPTAAQL ADPGVKLKAL LSTAA
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