| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3257 |
|---|
| Symbol | |
|---|
| ID | 6163696 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 3613902 |
|---|
| End bp | 3615242 |
|---|
| Gene Length | 1341 bp |
|---|
| Protein Length | 446 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 641666031 |
|---|
| Product | chloride channel core |
|---|
| Protein accession | YP_001792280 |
|---|
| Protein GI | 171059931 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0038] Chloride channel protein EriC |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACGATC ACGAACCCGA CTTCTGGCGC AACCTGCGCC TCGAACTGGC CTCCGGCGCG
CAGTGGCGCG ACCGTGCGGT GGTGCTGGCC TACGCGGCCG CCACCGGCCT GGTGGTGGTG
GGTTTCACGC TGCTGGCCGA GGCCGCGAGC GAGGCCTTCG AGCACCTGCG CCAGCTCGGC
AGCGATAACG GCAACGGCTA CGGCCGCTGG CTGACGCTGA TCTGGACCCC GGCGCTGACC
GTCGCGCTGC TGTGGTGGAC ACGCCGCTTC GTGCCCGGCG CGCTGGGCTC GGGCATCCCG
CAGGTGGTGC TGGCACTCGA TGACCAGACG CCGCCCGAGC GGCGTGCCGC GCTGGTGTCG
TTGCGGCTGT CGCTGCACAA GATCGCGCTG GTCGCGGGCG GCCTGCTGGC GGGCCTGTCG
ATCGGCCGCG AAGGCCCGAC CGTGCAGGTC GGCGCCGGCG TGATGCAGCA CGCCCGGCGC
TGGCTTTCGC CCGGCGCCGG CATCGACGCC CACGACCTGA TGGTGGCCGG CGCCGCGGCC
GGCATCGCCG CGGCGTTCAA CACGCCGCTG GGCGGGGTGA TGTTCGCGCT GGAACAGCTG
TCACGCCGGC GCAGCCTGTC GCAGAGCTCG CTGGTGATCC TGAGCATCGT GCTGTCGGGG
CTGGTGGCGG TGTCGGTGTT CGGCAACCTG AGCTATTTCG GCGTGCTGCG GGTGCAGCAG
CTGTCATGGT CGCTGTTCGG GCCGGGCCTG CTGGTGGCGC TGGTGGCGGG GCTGGCGGGC
GGGCTGTTCT CGCGCCTGAT CGTGGCCTCG GCACGCGGCC TGCCCGACCG CTGCAGCCGC
TGGCGGGCGC AGCACCCGCT GCGTTTCGGC GCCGGCTGCG CGCTGGCGGT GGCCGTGATC
GGCCTCGTTA CCGGCGGCGC CACGGCCGGC GCCGGTTATG CGCCCACCCG CGCGCTGCTC
GAGGCGCAGG CCGAGCTGCC GGCGGTCTAC ACGCTGCTGA AGTTCTGCGC CACCTGGCTG
TCGGCCTGGA GCGGCGTGCC CGCGGGCACG TTCGCGCCGT CGCTGGCGAT CGGCGCGGGC
ATCGGCCACG ACATCGCCCA GCTCACCGGC GTGGGCGCGC AGGCGGCGAT CCCGCTGATC
GCTCTCGGCA TGGTGGGTTT CCTGGCGGCC ACCACGCAGG GGCCGATCAC GGCCTTCATC
ATCGTGATGG AGATGGTGTC CGGCCACGCC ATGGTGCTCA GCCTGATGGC CACCGCGCTG
CTGTCGAGCG GTGTGGCGCG GCTGCTGACG CGGCCGATGT ACCTCGAACT GGCCCAGCTG
CTGGCGCGGC CGAGGCCTTA G
|
|---|
| Protein sequence | MHDHEPDFWR NLRLELASGA QWRDRAVVLA YAAATGLVVV GFTLLAEAAS EAFEHLRQLG
SDNGNGYGRW LTLIWTPALT VALLWWTRRF VPGALGSGIP QVVLALDDQT PPERRAALVS
LRLSLHKIAL VAGGLLAGLS IGREGPTVQV GAGVMQHARR WLSPGAGIDA HDLMVAGAAA
GIAAAFNTPL GGVMFALEQL SRRRSLSQSS LVILSIVLSG LVAVSVFGNL SYFGVLRVQQ
LSWSLFGPGL LVALVAGLAG GLFSRLIVAS ARGLPDRCSR WRAQHPLRFG AGCALAVAVI
GLVTGGATAG AGYAPTRALL EAQAELPAVY TLLKFCATWL SAWSGVPAGT FAPSLAIGAG
IGHDIAQLTG VGAQAAIPLI ALGMVGFLAA TTQGPITAFI IVMEMVSGHA MVLSLMATAL
LSSGVARLLT RPMYLELAQL LARPRP
|
|---|
| |