| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3252 |
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| Symbol | |
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| ID | 6163578 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 3608615 |
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| End bp | 3609835 |
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| Gene Length | 1221 bp |
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| Protein Length | 406 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641666026 |
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| Product | hypothetical protein |
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| Protein accession | YP_001792275 |
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| Protein GI | 171059926 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0577] ABC-type antimicrobial peptide transport system, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCAGCC TGGCCGGCCG CGACATCCTG CATTCGTGGG GCAAGTTCGT GCTCACAGGC
CTCGGCCTGG GCCTGCTGAT CGGCGTCACG CTGACCATGG CCGGGGTCTA CCGTGGCATG
GTCGACGACG CCCGGCGGCT GCTCGACAAC AGCGGCGCCG ACCTGTGGGT GGTGCAGCAG
CACACCCAGG GGCCGTACGC CGAAGCGTCG AGCCTGCGCG ACGACGCCGT GCGCGGCGTG
CTCGGCCTGC CCGGCGTGGC GCGGGCCGCC AACGTCACCT ACCTGACGAT GCAGGTCGCC
CGCAGCGCAG CGGCACCCGG CGTGGCGGCG GTGGGCGAGG ACGTGCGCGC GATGGTGGTC
GGCTTCGAGC CCGGCCAGCC CGGCGAACCC GGTCATCTGC TGGCGGGCCG CCACATCACG
CGCAGCCACT ACGAGGCGGT GGCCGACGTG CGCACCGGCT TCGCGATCGG CGAGCGCATC
CGCATCCGGC GCCACGACTA CACGGTGGTG GGGCTGACGC AGCGCATGGT GTCGTCGGGT
GGCGACCCGA TGGTCTTCAT CGCGCTCAAG GACGCCCAGG AGGCGCAGTT CCTCAAGGAC
AACGAGGCCA TCCTCAACGA TCGCGCCCGC ACCGCCGCCA ACCCCGGCCT GAATCGACCG
GGCGTGCCTG GGCTGCTCGA AGCCATCCAG GCTTCGCAGG CCAGCAGCCG CAGCGTCAAC
GCCGTGCTGG TGCAGATCCG CCCCGGCTTC GACGCCGAAG CGGTGGCCGA GCCGATCCGC
CGCTGGAAGC ACCTCGGCGC CTACACCCGC GCGCAGATGG AGGAGATCCT GGTGGCCAAG
CTGATCGCCA CCTCGGCCCG GCAGATCGGC ATGTTCCTGG TGATCCTGGC GGTCGTCAGC
GCGGCCATCG TCGCCTTCAT CATCTACACC ATGACGCTGG GCAAGATCCG CGAGATCGCG
GTGCTCAAGC TGATCGGTAC CCGCAACCGC ACCATCGCCG GGATGATCCT GCAGCAGGCG
CTCGGGCTCG GCCTGATCGG CTTCATCGTC GGCAAGGTGG CGGCCACGTT CTGGGCGCCG
GTGTTCCCGA AGTACGTGCT GCTGGAGTCC GGCGACGCCG TGCGCGGCTT CATCGTGGTG
ATGCTGATCT GCGCGCTGGC CAGCACGCTG GCGATCCGTG TCGCGCTCAG GGTCGACCCG
GCCGCGGCGA TCGGAGGCTG A
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| Protein sequence | MISLAGRDIL HSWGKFVLTG LGLGLLIGVT LTMAGVYRGM VDDARRLLDN SGADLWVVQQ
HTQGPYAEAS SLRDDAVRGV LGLPGVARAA NVTYLTMQVA RSAAAPGVAA VGEDVRAMVV
GFEPGQPGEP GHLLAGRHIT RSHYEAVADV RTGFAIGERI RIRRHDYTVV GLTQRMVSSG
GDPMVFIALK DAQEAQFLKD NEAILNDRAR TAANPGLNRP GVPGLLEAIQ ASQASSRSVN
AVLVQIRPGF DAEAVAEPIR RWKHLGAYTR AQMEEILVAK LIATSARQIG MFLVILAVVS
AAIVAFIIYT MTLGKIREIA VLKLIGTRNR TIAGMILQQA LGLGLIGFIV GKVAATFWAP
VFPKYVLLES GDAVRGFIVV MLICALASTL AIRVALRVDP AAAIGG
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