| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3185 |
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| Symbol | |
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| ID | 6162968 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 3520499 |
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| End bp | 3521908 |
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| Gene Length | 1410 bp |
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| Protein Length | 469 aa |
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| Translation table | 11 |
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| GC content | 76% |
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| IMG OID | 641665959 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001792208 |
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| Protein GI | 171059859 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.000813582 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGTCCAAGG CTGCCCTCAG CGAACCGAGC ATCGACGACC CGCACGGCGC AGCCGGCCCG
ACGGCGGCCC CCCGCAGCCG CTCGCACCCG TGGCGGTCGG TGCTGGTGGC CGTGCTGCTG
GTGGCGGGAA TGGGCGTGGC GGGTTACGTC GGCCACGACG TGTTCCTCGA CCGCGCCGCG
CAGCACCACC TCGACAGCGC CCGGATGGCG CACTTTGCCG CCACGCCCGA TCTCGACCTG
GCCCGCCAGG AGTACCTGCT GACGCTGCAG GCGCGGCCCG AGCTCGGCAC GGCGCATTTC
TACCTCGGCC ACCTGCTGCT GCGCACGCGC GAATTCGACG CCGCCCGGGC GCACTTCGCG
GCGGCGCTGC GGGACCACGA GGGGCTGCCG GCCGCCTACC GGCCGGACGC CCTGCGCCTG
CTGGCCGGGC TCAATGCCGA CGGCGAGCCG GCCGCCTTGC AGCGCACGAC CGAAACCCTG
GCGGTCCGGC CCGCCGACGC CGCCAGCGCG AACGACGCGG CCAGCCTGCT CGTGATCCCG
AGCGAGCCGA CCGCGGCCGG CCGGCCGCTG GCCGCGGGCA AGGCCGGCCG GCTCGACATC
GTGCACGCGG CGGCGGCGGC CGAGCGCGCC GCGCTGGCAG CCCAGCGGCC GGCGCCGTCG
CCGGATTTCC TGTTCGCCGA CCACTCGCAG GCGATCGCCA CGCTGGCGCT GCGGGTGCCG
GCCTCGTCGG ACGTGCAGCG CGAGGTCAAC CGCCAGCTCG AAGCGCTCCA TGCCGGCGAC
GTGCAGCGGC GCCTGAGCGC GGCCAGCACG CTGGCGATCG CGCCGGACCT GAACTCGGAC
GCGGTGCCCG GCGCGGTCGA ACGGGCCGAG TCGAGCATGC TGCAACAGCG CGCCGCGCCG
GCGGTGGCCG AGGCCACGCA GGTGACGCTG GGCCTGCTGC AGTCGGCCAG CCCGCTGACG
CTGGCGCTGA ACCGCCAGGC GATCCTGCGG CTGGTCGAGG CCGCCACCGC GCTGGGCCCG
GATGCCAGCC AGGCCGCCGA ACAGGTGCGG CAGCGGGTGG TGGCCATCAC CAGCGTGCCA
CGGCCGGTGG TCTACATCCA GATTGCCAGC GAGGCCCAGC GGCCGGTCGC CCTGCAACTG
GCCAGCCGCC TGACCGAGGC CGGCTGGGTC ACGCCCGAGC TCGAGCTGGT CAACGAGCGC
GCCCCCGCGC GCACCGAGGT GCGCAGCCAG GGCACCAGCC ACCAGGGGCT GGCGCGCTGG
ATGCGACGGC TGGCCAGCGA AACCACCGGC CAGATCGCCG ATCTGAGCAA TCTGCGGCGG
GCCGCGCCGA GCGGCGACGT GTACGAGCTC TGGCTCGACC GGGATCTCTG CGTGGCACCC
GAGCGGCTGG TGCCCGGCTG CCCCGGCTGA
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| Protein sequence | MSKAALSEPS IDDPHGAAGP TAAPRSRSHP WRSVLVAVLL VAGMGVAGYV GHDVFLDRAA
QHHLDSARMA HFAATPDLDL ARQEYLLTLQ ARPELGTAHF YLGHLLLRTR EFDAARAHFA
AALRDHEGLP AAYRPDALRL LAGLNADGEP AALQRTTETL AVRPADAASA NDAASLLVIP
SEPTAAGRPL AAGKAGRLDI VHAAAAAERA ALAAQRPAPS PDFLFADHSQ AIATLALRVP
ASSDVQREVN RQLEALHAGD VQRRLSAAST LAIAPDLNSD AVPGAVERAE SSMLQQRAAP
AVAEATQVTL GLLQSASPLT LALNRQAILR LVEAATALGP DASQAAEQVR QRVVAITSVP
RPVVYIQIAS EAQRPVALQL ASRLTEAGWV TPELELVNER APARTEVRSQ GTSHQGLARW
MRRLASETTG QIADLSNLRR AAPSGDVYEL WLDRDLCVAP ERLVPGCPG
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