| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3175 |
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| Symbol | |
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| ID | 6161597 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 3509246 |
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| End bp | 3510175 |
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| Gene Length | 930 bp |
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| Protein Length | 309 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641665950 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_001792199 |
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| Protein GI | 171059850 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.000303245 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACCGCGG GCATCCAACC GGCCGATCTG GGCTTCTTCT CCGCGCTGGC CAGTGCCGGC
AGCCTGAGTG CGGCGGCGCG TGAACTGAGC ATCACGACAC CTGCGGTCAG CAAGCACCTG
GCGCTGATGG AGTCGCGCCT GGGCGTGTCG CTGGTCAACC GCACGACGCG GCGCATGAGC
CTGACGCCCG AGGGCGAGCT CTACCTCGAA CACGCGCGCC GCATCCTCGG CGAGATCGAC
GACATGGAGG CGCTGCTCGG TGTCTCCAAG GCCACGCCGA AGGGGCTGCT GCGGGTGAAC
GCGACGCTCG GTTTCGGCCG CAGCCACGTG GCGCCGCTGA TCTCGCGCTT CGTGCGCAAG
CATCCGCAGG TCGAGGTGCA GCTGCAGTTG TCGGTCAATC CGCCGCCGTT GACCGAAGAC
TCGTTCGACG TCTGCATCCG CTTCGGTGCG CCGCCCGATG CGCGCGTGAT CGCGCGCCAC
ATCGCGCCGA ACCGGCGGCT GCTCTGCGCC GCACCGGCCT ATCTGGCCAA ACACGGCACA
CCCAAGGTGC CCAACGACCT GAGCCGCCAC AACTGCATCG GCATCCGCCA GGGCGAAGAA
GCCTACGGCG TGTGGCGCCT GACCAGCGGC CGCGGCAAGG CCGCGACCAC CGAGGCGATC
AAGACCCGCG GCAACCTGAC CACCAACGAC GGCGAGATCG CCGTCAACTG GGCGCTCGAC
GGCCACGGCA TCCTGATGCG GGCCGAGTGG GACATCGAGC GCCACCTGAA AAGCGGCCGC
CTGGTGCAGG TATTGCCGCA GTGCTATACG CCCGATGCCG ACATCCATGC GGTCTACCCG
CAGCGCCATC AGCTGGCGGC GCGGGTGCGG GCGTTTGTCG ACTTCGTGGC GCTGTCGTTC
AGGCAGCAGG CGGCGACCGG CCCGTCGTGA
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| Protein sequence | MTAGIQPADL GFFSALASAG SLSAAARELS ITTPAVSKHL ALMESRLGVS LVNRTTRRMS
LTPEGELYLE HARRILGEID DMEALLGVSK ATPKGLLRVN ATLGFGRSHV APLISRFVRK
HPQVEVQLQL SVNPPPLTED SFDVCIRFGA PPDARVIARH IAPNRRLLCA APAYLAKHGT
PKVPNDLSRH NCIGIRQGEE AYGVWRLTSG RGKAATTEAI KTRGNLTTND GEIAVNWALD
GHGILMRAEW DIERHLKSGR LVQVLPQCYT PDADIHAVYP QRHQLAARVR AFVDFVALSF
RQQAATGPS
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