Gene Lcho_3170 details

Gene Information

• Locus tag: Lcho_3170
• ID: 6161652
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 3502013
• End bp: 3502615
• Gene Length: 603 bp
• Protein Length: 200 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 641665945
• Product: resolvase domain-containing protein
• Protein accession: YP_001792194
• Protein GI: 171059845
• COG category: [L] Replication, recombination and repair
• COG ID: [COG1961] Site-specific recombinases, DNA invertase Pin homologs

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 23
• Fosmid unclonability p-value: 0.00430122
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGAAGACGA CACCGACCAC GCAAGCCCAG GCAGACGCTG GCCACCGCGT GGGCTACATC 
CGGGTTTCGA GCGTCGACCA GAACACGACC CGTCAGCTTG ACGGCCTGGT GCTGCACAAG 
GTGTTCACCG ATCACGCCAG CGGCGGCACG ACGAACCGCC CGGCGCTGGC CGAAGCGCTG 
GCCCATGTGC GGGCGGGTGA CTGCCTGGTG GTCCACTCCA TGGATCGGCT CGCCCGCAAC 
CTGGACGATT TGCACCGCAT CGTGCGCGAG CTGACCGACC GTGGCGTGTC GGTCGAGTTC 
GTCAAGGAAG GGCAGACATT CACCACTGAG GGTGTCAACC CGATGGCCAA CCTGATGCTG 
TCGATGCTGG GCGCGTTTGC CGAGTTCGAG CGTTCACTGA TCCGGGAGCG CCAGCGGGAG 
GGCATCGCCA TCGCGCGCGG GCAGTCCGAC AAGTACCGGG GCCGGGCGCC GGCCCTGACC 
GCGGAGCAAG CCGCGGATCT GCGCCAGCGC GATGCGGCGC AAGGCGGCAA GGGCCGGGCG 
GCGCTCGCTC GTGACTTCGG CGTGTCGCGC CAGACGCTGT ATCAGTACCT GGCGAAGGAC 
TGA 

 

Protein sequence

MKTTPTTQAQ ADAGHRVGYI RVSSVDQNTT RQLDGLVLHK VFTDHASGGT TNRPALAEAL 
AHVRAGDCLV VHSMDRLARN LDDLHRIVRE LTDRGVSVEF VKEGQTFTTE GVNPMANLML 
SMLGAFAEFE RSLIRERQRE GIAIARGQSD KYRGRAPALT AEQAADLRQR DAAQGGKGRA 
ALARDFGVSR QTLYQYLAKD