Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_3116 |
Symbol | |
ID | 6164071 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 3447225 |
End bp | 3448088 |
Gene Length | 864 bp |
Protein Length | 287 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 641665891 |
Product | hypothetical protein |
Protein accession | YP_001792141 |
Protein GI | 171059792 |
COG category | [S] Function unknown |
COG ID | [COG5501] Predicted secreted protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 69 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCACATG ACCCCGACCG TCGCCGCCTG CTTGTAGCGG CATGGGGCGG CAGCGCCGCG CTGATCGGCG CCTGGCTGCC CGGTGGCAGC CACGCCGCGA TCGGCGGGCT GCCGAGCAAC GTCGGCCACG CCGACAGCTC GCCGCAGTGG GAGCTGCTGC GCGGCAAGCT GTTCGGCGAG CGGCCGATCG CCGCCGGCGC CGCCAGCCAG GTGCAGATCA TCGTGCCGCT GCGCGCGGCC TACGGCGCCT CGGTGCCGGT CAAGATCGTC TCCAGGATCG CGCAGACACC CGAGCGCCAG GTGCGCCGCA TGACGCTGCT GGTCGACAAG AACCCCTCGC CGATCGCCGC CACGCTGACG CTCGGCACAG CGCTCGGCCA GGCCGATTTC GAGACCCGGC TGCGGGTCGA CGAATACAGC CACGTGCGCG TGGTCAGCGA GCTGAGCGAC GGCACGCTGC ACATGGATTC GCGCTACGTC AAGGTCTCGG GCGGCTGCAG CGCACCGCCC AACCGCGAGG CCCTGCACCT GATCGGCCGC ACCACGATGC GCCTGCCCGC CGGCCTGCAC CCCGGCGCGC CCACGCCGGT CGAGCTGAGC GTGGTGCACC CCAACGACAC CGGCTTCGAG CTCAACCAGG TCACGGTGAT GTTCATCCCG CCGCACTTCG TGCGCAGCAT CCGCGTGCGG CTGGGCGAGG CGCTGCTGTT CGAGGCCGAC ACCGATTTTT CGATCAGCGA GAACCCGAGC TGGCGCTTCA ACTTCGTGCC ACGCGCCGAT CAGCACGCGC TGCTGACCGC AGAGGTCGAG GACACAAAAG AACAGCGCTT TCGCGGCACG CTCGACCCGT GGGCGGCGGC GTGA
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Protein sequence | MAHDPDRRRL LVAAWGGSAA LIGAWLPGGS HAAIGGLPSN VGHADSSPQW ELLRGKLFGE RPIAAGAASQ VQIIVPLRAA YGASVPVKIV SRIAQTPERQ VRRMTLLVDK NPSPIAATLT LGTALGQADF ETRLRVDEYS HVRVVSELSD GTLHMDSRYV KVSGGCSAPP NREALHLIGR TTMRLPAGLH PGAPTPVELS VVHPNDTGFE LNQVTVMFIP PHFVRSIRVR LGEALLFEAD TDFSISENPS WRFNFVPRAD QHALLTAEVE DTKEQRFRGT LDPWAAA
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