Gene Lcho_3106 details

Gene Information

• Locus tag: Lcho_3106
• ID: 6161363
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 3438713
• End bp: 3440533
• Gene Length: 1821 bp
• Protein Length: 606 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 641665881
• Product: methanol/ethanol family PQQ-dependent dehydrogenase
• Protein accession: YP_001792131
• Protein GI: 171059782
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG4993] Glucose dehydrogenase
• TIGRFAM ID: [TIGR03075] PQQ-dependent dehydrogenase, methanol/ethanol family

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 64
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAAAGCAT CCGGTGCAAG GAGCAATTGG CTGCTCGGCA GTGCGTGCAT CGCCCTGCTG 
GGCCTGCCGA CGCTGTCGAT GGCCAACGCC GATGTCGAGA AGAACATCAG CAACCCGAAG 
AACTGGGCGA TGCAGGCTGG CGACATGTTC AACCAGCGCT ACAGCAAGCT CAAGCAGATC 
AACAAGGGCA ACGTCGGCAA GATGCAGGTC GCCTGGACCT TCTCGACCGG CGTGCTGCGC 
GGTCACGAAG GCTCGCCGCT GGTGATCGAC GGGACGATGT ATCTGCACTC GCCGTTCCCG 
AACAAGGTCT TCGCGATCGA CATCGACACC CAGAAGATCC TCTGGAAGTA CGAGCCCAAG 
CAGGATCCGG CAGTGATCCC GCAGATGTGC TGCGACACCG TCAACCGCGG CCTGGCCTAT 
GCCGAGGGCA AGGTCTTCCT GCAGCAGGCC GACTCGAACC TGGTCGCGCT CGACGCCAAG 
AGCGGCAAGG TGGTCTGGAC CGTCAAGAAC GGCGACCCCA AGCTCGGCGC GGTCAACACC 
AACGCGCCCC ACGTCTTCAA GGACAAGGTC ATCACCGGCA TCTCGGGCGG TGAGTGGGGC 
GTGCGCGGCT TCCTGGCGGC CTACGACATC AACACCGGCC GGCAGGTCTG GAAGGGCTAC 
AGCGTCGGCC CCGACAGCGA GATGCTGATC GACCCCGACA AGACCACCAC CTGGATGGAC 
GGTGCGGTCA AGCCGGTGGG CAAGGACTCG TCGCTCAAGA CCTGGCAGGG CGACCAGTGG 
AAGATCGGCG GCGGCACCAC CTGGGGCTGG TACAGCTACG ACAAGGCGAC CAACGCGGTC 
TACTACGGCA CCGGCAACCC GTCGACCTGG AACCCGGCGC AGCGCCCGGG CGACAACAAG 
TGGTCGATGT CGATCTGGTC GCGTGACGTG GATACCGGCA AGGTCAACTG GGTCTACCAG 
ATGACGCCGT TCGACGAGTG GGACTTCGAC GGCATCAACG AGATGATCCT GGCCGACATC 
CCCGTCAAGG GCAAGATGAC CAAGGCGCTG GTGCACTTCG ACCGCAACGG CTTCGGCTAC 
ACGCTCGACC GCGTGACCGG CGCGCTGCTG GTGGCCGAGA AGTACGACCC GAAGGTCAAC 
TGGGCCACGC ACGTGGACAT GAAGTCCGGG CGGCCGCAGG TGGTCAAGCA GTACTCCACC 
GCGCAGAACG GGCCCGACGT CAACACCAAG GGCATCTGCC CGGCCGCGCT GGGCTCGAAG 
GACCAGCAAC CGGCCTCGTT CGACCCCAAC ACCGGCCTGT TCTACGTGCC GACCAACCAC 
GTCTGCATGG ACTACGAGCC GTTCAAGGTC GAGTACACCG CCGGCCAGCC GTACGTGGGC 
GCCACCTTGT CGATGTACCC CGCGCCGGGC AGCCATGGCG GCATGGGCAA CTACATCACC 
TGGAACGCCG GCACCGGCAA GATCGTGCAG AGCAAGGCCG AGAAGTTCTC GGTGTGGAGC 
GGCTCGCTCA ACACCGCGGG CGGCCTGAGC TGCTACGGCA CGCTGGAGGG CTACCTGAAG 
TGCGTCGATG CCAAGGACAT CAACAAGGAA CTGTTTAAGT TCAAGACCCC GTCCGGGATC 
ATCGGCAACG TGTTCACCTA CGAGCACAAG GGCAAGCAGT ACATGGGCGT GTTCTCGGGC 
ATCGGTGGCT GGGCCGGCAT CGGCATGGCC GCAGGCCTGG AGAAGGACAC CGACGGCCTG 
GGTGCCGTGG GCGGCTACAA GGAACTCAAC CAGTACACCG AGCTGGGCGG TTCGCTGACC 
GTGTTCGCGC TGCCGAACTG A 

 

Protein sequence

MKASGARSNW LLGSACIALL GLPTLSMANA DVEKNISNPK NWAMQAGDMF NQRYSKLKQI 
NKGNVGKMQV AWTFSTGVLR GHEGSPLVID GTMYLHSPFP NKVFAIDIDT QKILWKYEPK 
QDPAVIPQMC CDTVNRGLAY AEGKVFLQQA DSNLVALDAK SGKVVWTVKN GDPKLGAVNT 
NAPHVFKDKV ITGISGGEWG VRGFLAAYDI NTGRQVWKGY SVGPDSEMLI DPDKTTTWMD 
GAVKPVGKDS SLKTWQGDQW KIGGGTTWGW YSYDKATNAV YYGTGNPSTW NPAQRPGDNK 
WSMSIWSRDV DTGKVNWVYQ MTPFDEWDFD GINEMILADI PVKGKMTKAL VHFDRNGFGY 
TLDRVTGALL VAEKYDPKVN WATHVDMKSG RPQVVKQYST AQNGPDVNTK GICPAALGSK 
DQQPASFDPN TGLFYVPTNH VCMDYEPFKV EYTAGQPYVG ATLSMYPAPG SHGGMGNYIT 
WNAGTGKIVQ SKAEKFSVWS GSLNTAGGLS CYGTLEGYLK CVDAKDINKE LFKFKTPSGI 
IGNVFTYEHK GKQYMGVFSG IGGWAGIGMA AGLEKDTDGL GAVGGYKELN QYTELGGSLT 
VFALPN