| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3101 |
|---|
| Symbol | |
|---|
| ID | 6161710 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 3432597 |
|---|
| End bp | 3435998 |
|---|
| Gene Length | 3402 bp |
|---|
| Protein Length | 1133 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641665876 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001792126 |
|---|
| Protein GI | 171059777 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 58 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCACTC CCGTCAACCT CCACACAGGC GCAACCGCCC CCGCAACCGC GGCGTGGCTG
TTGCGCCTTT GCGCATTTGC GTGGCTGCTA TTGGCCGGCA CACTGGCTCA CGCGGCGAGC
TACACCTACC GCAGCGACAG CTACAACTGG GAAAGCGCCA CCAACGCCGT CGCCTGGGAC
CGGACCTGCA CCAGCTACCC CGGCGACGAC GACAAGGCCA CGCTCGCCTT CACCGGCGGC
TTCACCTTCA CCTTCGCCGG CATCAAGTAC AGCTCGGTGC GCGTGCTCAG CAACGGCGGC
CTGCAGTTCG GCACCGACAG CGGCTTCTTC CGCACCTACG GCAACACCAA CCTGCCCGCC
GCCGCCGCGG GCAGCCTGAA CAAGTCCTGC GCGGGCGGCG CCACCAGCAA CGTGCTGATG
GCCTACTGGA CCGACCTCGA CCCCAGCCGC GCCGGCAGCG GCAACGTCAC CTGGCAGCAG
AAGGGCACGG CGCCGAACCG CTACGTGGTG GTGTCGTGGA ACGCGGTCTA CCAGTACAAC
ACCAGCACGC CCTACGCCTT CCAGATCATC CTGTTCGAGA ACGGCGAGTT CAAGTTCCAG
TACGGCAACG CCAATGCCTC CGGCTCCAAC GCCACCATCG GCGTGCAGGT GAGCGGCAGC
GACTACACGC TCTACTCGTA CAACAGCGGC TACAACGCCA ACGGCAGCGC GATCCGCTGG
TTCGTGCCCA GCGGCGCGGC GGCGCGGGTG GCCGAATACC GCTTCGACGA ATACGGCTGG
AGCGGCACGC TCGGCGAGGT GGCCGACGCC ACCGGCAACG GCTACGGCGG CGTGCGCCTG
GGCAGCGCCA GCCCGGTGGC CGGCGGCGTG GTCTGCCGTG CGCTCGACGT GCCGGCCAAT
ACCAGCAGCA CCAGCGCGGG CGTGGACACG CTGCTCAACG TCGCGAGCGT GCTCGGCACC
GGCGGCTCGA TCTCGTTCTG GCACCGCGCC AACGCCGCCT GGGCCAGCGC GGCCGACGGC
CAGCTGTTCG ACGCCACGCT GACGTCGAAC CGGTCCTTCC ACCTGGTGCG CCGCTCCGGC
GGCACGCTGC GTTTTGCCGT CACCGACAGC GCCGGCGCGA CGCTGGTGGC CGACACGCCC
GCCCAGGTCG TCCTGGCCGG CACCTGGGTG CACATCACCG CCACCTGGCG GCTGGCCGCC
GGCAGCAACC AGAGCGTGCT GCGGCTGTAT GTCAACGGCG TGCTGGCCGC CACCCGAACC
GGTACCACCA GCGGCGTGAT CTCGCCCACG CTGGGCACGC TGGTGATCGG CGACAGCCGC
GCCAACCTCA CCAGCAACAA CGCCACCCTC AGTTCGGCCA ACGGCCGCAT CGACGAGCTG
CGCATCTCCA ACTACGAGTT GAGCCCGGCC GAGATCGCAC TCGACCTCGT GCAGACCCAC
GACTGCGCGC CGCCGCTGCA CCACATCGAG ATCCGCCACG CCAGCGGCAG CGGCCTGACC
TGCATGGCGT CGACGCTGAC CGTGGTGGCC TGCCAGGACG CCAGCTGCAG CACGCCCTAC
ACCGGCGGCA TCGCCGGCAC GCTCAGCGGC AGTCACGCCG CCACGCTGTG GCCGGCCACG
GCGGCCTTCG TGATCGCGAC CGGCAGCAGC AGCACCACCG TGCCGGTGCA ACTGCTCAGC
GCCGGCAGCA CACGCCTGGG CGTGGCCGCA TCGATCCCGT CGGCACCGAG TGCGGCCACC
TGCGACTTCG GCAGCCCAGC CTGCACCTAC ACGGCCGAAG ACAGCGGCCT GCTCGCCAGC
ATCGGCCATC ACGTGGCCGA GAGCAGCCAG ACACTGACCC TGCAAGCCGT GCGCAAGGCC
GACAACAGCG CCGCCTGCGT GCCCGCGTTT GCCAACCTGA CCCGCGCGCT GCAGTTCAGC
TGCAGCTACG CCAACCCGTC CAGCGGCAGC CGGCCGGTGC GCATCGGCGG GCGGGCCTTG
AACGCGGCCA ACAACGCGGG CGCCGCCTGC GACGGCAGCG GCCAGACGCT CAGCCTGCTG
TTCAACGCCG CCGGCATCGC CAGCACCCCG CTGCAATACG CCGACGCCGG CCAGGTCGAC
CTCGGCGTGA GCTACACCGG CAGCAGCCTC ACCAACGACC TGGGGCTGAC GCTGGCCGGC
AGCAGCAGCT TCATCGCCGC ACCCGCGTCG CTGGCCTTCA GCGCCATCAC GGCCGGGCCG
ATCCGGGCGG GCACGGCGTT CAGCGCGTCG CTCTCGGCGC TCAACAGCGC CGGTGCGGTG
ATGCCCAACT TCGGCCGCGA GATCACGCCG GCCACGGTCA GCCTGAGCCA CAGCCGCGCC
CAGCCGAGCG GCAGCGGCGC GAGCAACGGC AGCTTCACCG GCAGCCTGGG CAGCTTCAGC
AACGGCAGCG CCAACGCCGG CAACCTGGTG TGGAGCGAGG TCGGCCGCAT CGACCTCAAC
GCCGCCCTGA CGAACTACCT GGGCAGCGGT CTGGGCGCCG TCGGCAGCAC CGGCAGCAGC
GGCGCGGTCG GGCGCTTCAT CCCGCACCAC TTCGACCTGA GCGCCACGCC GGCCTGCGGC
GTCTTCAGCT ACGCCGGCCA GCCGTTCAAG GTGGTGATGA CGGCCCGCAA CGGCCTGCCG
ATACCCGGCA CCACGCTCAA CTACGACGGC AGCACGAGCA CCAGCCCCAA CTTCGCCAAG
GCGCTGACGC TCAGCGACAC CGCGCTCGGT GGCATCGGCA GCTTCGGCGC CAGCGCGGGC
GTGGCCGCGA CGGCCTTCCG CGCCGGCGTG GCCACGGTGA CGACGCCCGC CTACAGCTAC
ACCGACAAGC TCACCGCGCC GCGCAGCCTG GCGCTGCGCG CGATCGACAG CGACGCCGTC
AGCTCCGCCG GCACCACCGA ACCCGCGATG CCGCTGCGCA GCGGCCGGCT GCGCGTGTCC
AACACCTTCG GCTCCGAGAA AACCGCGCTC GCCCTGCCGG TGCAAACGCA ATACTGGAGC
GGCAGCGCCT GGGTGCTCAA CAGCGCCGAC AGCTGCAGCG TGGTGCCGGC CGCGGCGATC
GCGCCGGTGC AGTACCTCGA CCACAAGGGC GCCGCGCGCA GCGCCTGGGC CGGCAGCATC
GGCGCCTTGA GCCTCACCGG CGGCCTGGGC CAGATCAGCG TGGCGGCGCC GCCGGCCGGC
GTGACCGGCA GCATCGACCT GGCGATCAAC CTCGGCACCA GCGCGGTCGA CACCAGCTGC
CTGGCCAGCC ATCCGGCCAG CAGCGGCGCC GGCCTGCCGT GGCTGCGCGC GCGCAACGGC
AGCTGCGCCA GCGGCTGGGG CAGCGACCCG AGCGCGCGCG TGAGCTTCGG CATCGCCGCG
CCCGAGACGC GCAAATCGGT GCACGTGCGG GAGATGTTCT GA
|
|---|
| Protein sequence | MTTPVNLHTG ATAPATAAWL LRLCAFAWLL LAGTLAHAAS YTYRSDSYNW ESATNAVAWD
RTCTSYPGDD DKATLAFTGG FTFTFAGIKY SSVRVLSNGG LQFGTDSGFF RTYGNTNLPA
AAAGSLNKSC AGGATSNVLM AYWTDLDPSR AGSGNVTWQQ KGTAPNRYVV VSWNAVYQYN
TSTPYAFQII LFENGEFKFQ YGNANASGSN ATIGVQVSGS DYTLYSYNSG YNANGSAIRW
FVPSGAAARV AEYRFDEYGW SGTLGEVADA TGNGYGGVRL GSASPVAGGV VCRALDVPAN
TSSTSAGVDT LLNVASVLGT GGSISFWHRA NAAWASAADG QLFDATLTSN RSFHLVRRSG
GTLRFAVTDS AGATLVADTP AQVVLAGTWV HITATWRLAA GSNQSVLRLY VNGVLAATRT
GTTSGVISPT LGTLVIGDSR ANLTSNNATL SSANGRIDEL RISNYELSPA EIALDLVQTH
DCAPPLHHIE IRHASGSGLT CMASTLTVVA CQDASCSTPY TGGIAGTLSG SHAATLWPAT
AAFVIATGSS STTVPVQLLS AGSTRLGVAA SIPSAPSAAT CDFGSPACTY TAEDSGLLAS
IGHHVAESSQ TLTLQAVRKA DNSAACVPAF ANLTRALQFS CSYANPSSGS RPVRIGGRAL
NAANNAGAAC DGSGQTLSLL FNAAGIASTP LQYADAGQVD LGVSYTGSSL TNDLGLTLAG
SSSFIAAPAS LAFSAITAGP IRAGTAFSAS LSALNSAGAV MPNFGREITP ATVSLSHSRA
QPSGSGASNG SFTGSLGSFS NGSANAGNLV WSEVGRIDLN AALTNYLGSG LGAVGSTGSS
GAVGRFIPHH FDLSATPACG VFSYAGQPFK VVMTARNGLP IPGTTLNYDG STSTSPNFAK
ALTLSDTALG GIGSFGASAG VAATAFRAGV ATVTTPAYSY TDKLTAPRSL ALRAIDSDAV
SSAGTTEPAM PLRSGRLRVS NTFGSEKTAL ALPVQTQYWS GSAWVLNSAD SCSVVPAAAI
APVQYLDHKG AARSAWAGSI GALSLTGGLG QISVAAPPAG VTGSIDLAIN LGTSAVDTSC
LASHPASSGA GLPWLRARNG SCASGWGSDP SARVSFGIAA PETRKSVHVR EMF
|
|---|
| |