Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_3078 |
Symbol | |
ID | 6160470 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 3407558 |
End bp | 3409060 |
Gene Length | 1503 bp |
Protein Length | 500 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 641665853 |
Product | O-antigen polymerase |
Protein accession | YP_001792103 |
Protein GI | 171059754 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 59 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTGCCT TCACCTCCCG ACCCCTGCCT GAAGTCGACA ACACCTTGGC CGGCACGGTT GCGGTCGCGC CGACGCAAGT CGACCCACCT TGGTGGCACC CGCTTCGGTC GACGTTCGTG TTCCTGCTCG TGCCGGCACT GATCGTGTTC GTCCCGCGGC TGTTCGGCGC CACCCTGCCG GTGCCGCTGC TCTACGTGCT GGCCGCCGTG TGCGGCGCCA TCATGGCGGT GCGCGCCCTG TCGAACCCTG AACTCCTGCT GGCCACCTTC ATCCTCTACC TGCCCTTCAG TCGCACCTAC GCCGCAGCGA TCGCCCCGGG CATCAATGGC ACCAACGTGC TCTACGCGCT GGTCATCGTG GCGTGGATCG CCACCGTCGT GCGCGAGAAA CGGCCGTTCT TCGTCGCGAT GCCGTTCAGC CGGCTGGTCA CGATCTGGGC TGCCATCAGC ATCCTTTCCG TGTTCACGGC CATGTCGACC ATGGGCGTCT CGTACATCAC GACAAGCCGT CTGCCGCAGG TCAAGGCCTG GTGTGATCAG TTCTTCGTGT TCTTCGCGAT GCTCAACCTG ATCCGCAATG GCGCGGCGGC GCGTCGCATG GCCGTCTACA TGATGCTCGG AACGCTGCTG GTGCTGATCT CGGGCTTCTT CGAGTGGCAG GACAAGCGCT ACTACGACCG CATCGACAAG GCGCGCCTGC TCGGCCCCCA GCAGCAGCCC AACGACTTCG GCGCCTTCAT CGTCTACGGG TTCGGGATTC CCGGCGCACT GATCCTGTGC CACATGTGGC GGGTGCGGAC CTGGCTGCTG GCCACACCGG TGCTCTACAT CGCCGCTCGC GTGTTGCTGG CCACCTTCTC GCGTGGCGCC GTGCTCGGCA TGGGCGCCCT GGCCGCCGCG CTGCTGCTGG TGCGCGGCCG CATCCTGGCC GCGTCGATTG CCCTGATCGG AGCCCTCGTG GTGCAGGTCG CACCCGAAGT CCTGCCTGCA TCGCTGAGCG CGCGCATGTC GCAAACCACC AGCGAAAGCG ATGGCGAGCT CGACAAGAGC TCTCAGACGC GTCTGGTCCT GTGGGATGCG GCCATCCAGA TCACGCTCGA CTATCCGATC TTCGGCACCG GCTTTGCGAC GTTCCCGAAG ATCAAGGACC AGTACGCGTC GATACCGACG GTCGAATCCG ACAACCACAA CATGTTCCTG TTCATCTGCT CGCAGATGGG ATTGCCGGCG TTGTTTGTCT TCCTGTTGAT CTTTGCCCGC ATGGCCTACA TCGGAGCGTG CGTGCACAAG CATGAGCACG AACCCTTCGG CAAGGCCATC GGGCTCGGCG CCGTGGGCAC GGCCGCCGGT ACGCTGGCCA TCAACATGTT CGGCTCGCGC ATGACCGATG CCGAGGTGAT GGCCTATGTG TGGATCACGA TCGCCGTGCT GTCGCACCTG TGGCGAGAAA ACCAGGCCCG GCAAGCCGGG CCTGCCGAGC CGCCGGCTCA GGTGACGCGG TAG
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Protein sequence | MSAFTSRPLP EVDNTLAGTV AVAPTQVDPP WWHPLRSTFV FLLVPALIVF VPRLFGATLP VPLLYVLAAV CGAIMAVRAL SNPELLLATF ILYLPFSRTY AAAIAPGING TNVLYALVIV AWIATVVREK RPFFVAMPFS RLVTIWAAIS ILSVFTAMST MGVSYITTSR LPQVKAWCDQ FFVFFAMLNL IRNGAAARRM AVYMMLGTLL VLISGFFEWQ DKRYYDRIDK ARLLGPQQQP NDFGAFIVYG FGIPGALILC HMWRVRTWLL ATPVLYIAAR VLLATFSRGA VLGMGALAAA LLLVRGRILA ASIALIGALV VQVAPEVLPA SLSARMSQTT SESDGELDKS SQTRLVLWDA AIQITLDYPI FGTGFATFPK IKDQYASIPT VESDNHNMFL FICSQMGLPA LFVFLLIFAR MAYIGACVHK HEHEPFGKAI GLGAVGTAAG TLAINMFGSR MTDAEVMAYV WITIAVLSHL WRENQARQAG PAEPPAQVTR
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