Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_3077 |
Symbol | |
ID | 6160469 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 3406017 |
End bp | 3407531 |
Gene Length | 1515 bp |
Protein Length | 504 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 641665852 |
Product | O-antigen polymerase |
Protein accession | YP_001792102 |
Protein GI | 171059753 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3307] Lipid A core - O-antigen ligase and related enzymes |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 57 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACGACT TCATCCCCAG ACGCGTGGCT GAAATCGGCA ACGCCTTGGC GGATGGGGTG CCGCTTGCAA CCGGACAGGC CGAGCCCCCT TGGTGGCAAC CCCTGCAATC GACGTTCAAG TTCTTTGCGA TACCGGCGCT GATCGTGCTG GTGCCCAGGC TGTTCGGCTC GACCCTTCCC GTGCCGGCGC TGTATCTGCT GGCGCTCGTT TGCTGCTTGC TGCTGGCCAA ACGGGCCCTG TCGGATCCTG AACTGATCCT GGCCACCTTC ATTCTCTATC TGCCGTACAC CCTCACCTAC GCAGCGACGA TCGCGCCCGG CGTCAATGGC ACGAACGGAC TCTATGCACT GCTGATCCTG GCCTGGGTCG CCCGTTCGGT GCGTGAACAG AGGCCGTTTT TCACCCCGAT GCCATTCACC GGGCTGGTCA AGACCTGGGC CATCCTGAGC TTGATATCGG TGGCCACGGC GATCTCGACC ATGGGCTTGG GGTTCATCAC GAACGGCAAG CTGCCCGATA TCAAGGGATG GTGCGATCAG TTCATCGTGT TCTTCGTGGT GCTCAACCTC ATCCGCGACG GCGCCGCCGC GCGGCGTGTG GCGGTCTACA TGATGGTCGG CACGCTTCTG GTGATTTGCT CGGGATTCAC GGAGTGGCTG GACAAGCGCC ACTACGACCG CATCGACAAG GCCCGGCTGC TCGGACCGCA GAACCAGCCG AACGATCTGA GCGCCTTCAT CGTCTACGGC TTCGGGATTC CGGGTGCACT GATCATCTGC TACATGTGGC GCTTGCGCAC CTGGGTCGTG GCAACACCGA TGCTGCTCGT GACGGCACGC GTGCTGCTGG CCACCTTCTC GCGCGGAGGC CTGATCGGCA TGGGCGCGGT GGTGGCCGCA CTGCTGCTGA TCCGTGGCCG CGTGCTGTTC GCGACGATTG CCGTGGCCGG CACCCTGCTC GTCCAGGTCG TGCCCGAAGT CCTGCCCGAC TCGATGAACG CGCGCATGTC GCAGACCAGC GAACCCAGCG GTGAACTCGA CAAGAGTTCG CAGACCCGGC TCATCTTGTG GAACGCCGCA ATCGCGATCA CGCTGGAAAA CCCCATCTTC GGCACGGGCT TCCATACCTT CCGGGTCATC AAGGGCATGT ACACGGAGAT CCCGGTGCAC GAGTCCGACA ACCACAACAT GTTCCTGTTC ATCTGTTCGC AGATGGGCCT GCCGACCTTG TTCGTGTTTC TGCTGATCTT TGCCCGCCTG GCCTATGTGG GCGTCAGCCT GCACAAGCAC GCCCTGCACC CGTTCGACAA GGCGATCGGC CTGGGTGGCG TCGGCCTGGC CGCCGGCGTG ATGAGCATCA ACATGTTCGG TTCACGCATG ACCGACACCA TCGTGATGGG CTACGTGTGG ATCACGATCG CCGTGATTTC GCACCTGCGG AAAGAGCAGT TGGCCCGGCA GGCTGATGCG AGCGGCCGTG TCGACGTCGG CCCAGCACCC GGCGCGTCGA CTTGA
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Protein sequence | MNDFIPRRVA EIGNALADGV PLATGQAEPP WWQPLQSTFK FFAIPALIVL VPRLFGSTLP VPALYLLALV CCLLLAKRAL SDPELILATF ILYLPYTLTY AATIAPGVNG TNGLYALLIL AWVARSVREQ RPFFTPMPFT GLVKTWAILS LISVATAIST MGLGFITNGK LPDIKGWCDQ FIVFFVVLNL IRDGAAARRV AVYMMVGTLL VICSGFTEWL DKRHYDRIDK ARLLGPQNQP NDLSAFIVYG FGIPGALIIC YMWRLRTWVV ATPMLLVTAR VLLATFSRGG LIGMGAVVAA LLLIRGRVLF ATIAVAGTLL VQVVPEVLPD SMNARMSQTS EPSGELDKSS QTRLILWNAA IAITLENPIF GTGFHTFRVI KGMYTEIPVH ESDNHNMFLF ICSQMGLPTL FVFLLIFARL AYVGVSLHKH ALHPFDKAIG LGGVGLAAGV MSINMFGSRM TDTIVMGYVW ITIAVISHLR KEQLARQADA SGRVDVGPAP GAST
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