Gene Lcho_3077 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3077 
Symbol 
ID6160469 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp3406017 
End bp3407531 
Gene Length1515 bp 
Protein Length504 aa 
Translation table11 
GC content63% 
IMG OID641665852 
ProductO-antigen polymerase 
Protein accessionYP_001792102 
Protein GI171059753 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3307] Lipid A core - O-antigen ligase and related enzymes 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones57 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACGACT TCATCCCCAG ACGCGTGGCT GAAATCGGCA ACGCCTTGGC GGATGGGGTG 
CCGCTTGCAA CCGGACAGGC CGAGCCCCCT TGGTGGCAAC CCCTGCAATC GACGTTCAAG
TTCTTTGCGA TACCGGCGCT GATCGTGCTG GTGCCCAGGC TGTTCGGCTC GACCCTTCCC
GTGCCGGCGC TGTATCTGCT GGCGCTCGTT TGCTGCTTGC TGCTGGCCAA ACGGGCCCTG
TCGGATCCTG AACTGATCCT GGCCACCTTC ATTCTCTATC TGCCGTACAC CCTCACCTAC
GCAGCGACGA TCGCGCCCGG CGTCAATGGC ACGAACGGAC TCTATGCACT GCTGATCCTG
GCCTGGGTCG CCCGTTCGGT GCGTGAACAG AGGCCGTTTT TCACCCCGAT GCCATTCACC
GGGCTGGTCA AGACCTGGGC CATCCTGAGC TTGATATCGG TGGCCACGGC GATCTCGACC
ATGGGCTTGG GGTTCATCAC GAACGGCAAG CTGCCCGATA TCAAGGGATG GTGCGATCAG
TTCATCGTGT TCTTCGTGGT GCTCAACCTC ATCCGCGACG GCGCCGCCGC GCGGCGTGTG
GCGGTCTACA TGATGGTCGG CACGCTTCTG GTGATTTGCT CGGGATTCAC GGAGTGGCTG
GACAAGCGCC ACTACGACCG CATCGACAAG GCCCGGCTGC TCGGACCGCA GAACCAGCCG
AACGATCTGA GCGCCTTCAT CGTCTACGGC TTCGGGATTC CGGGTGCACT GATCATCTGC
TACATGTGGC GCTTGCGCAC CTGGGTCGTG GCAACACCGA TGCTGCTCGT GACGGCACGC
GTGCTGCTGG CCACCTTCTC GCGCGGAGGC CTGATCGGCA TGGGCGCGGT GGTGGCCGCA
CTGCTGCTGA TCCGTGGCCG CGTGCTGTTC GCGACGATTG CCGTGGCCGG CACCCTGCTC
GTCCAGGTCG TGCCCGAAGT CCTGCCCGAC TCGATGAACG CGCGCATGTC GCAGACCAGC
GAACCCAGCG GTGAACTCGA CAAGAGTTCG CAGACCCGGC TCATCTTGTG GAACGCCGCA
ATCGCGATCA CGCTGGAAAA CCCCATCTTC GGCACGGGCT TCCATACCTT CCGGGTCATC
AAGGGCATGT ACACGGAGAT CCCGGTGCAC GAGTCCGACA ACCACAACAT GTTCCTGTTC
ATCTGTTCGC AGATGGGCCT GCCGACCTTG TTCGTGTTTC TGCTGATCTT TGCCCGCCTG
GCCTATGTGG GCGTCAGCCT GCACAAGCAC GCCCTGCACC CGTTCGACAA GGCGATCGGC
CTGGGTGGCG TCGGCCTGGC CGCCGGCGTG ATGAGCATCA ACATGTTCGG TTCACGCATG
ACCGACACCA TCGTGATGGG CTACGTGTGG ATCACGATCG CCGTGATTTC GCACCTGCGG
AAAGAGCAGT TGGCCCGGCA GGCTGATGCG AGCGGCCGTG TCGACGTCGG CCCAGCACCC
GGCGCGTCGA CTTGA
 
Protein sequence
MNDFIPRRVA EIGNALADGV PLATGQAEPP WWQPLQSTFK FFAIPALIVL VPRLFGSTLP 
VPALYLLALV CCLLLAKRAL SDPELILATF ILYLPYTLTY AATIAPGVNG TNGLYALLIL
AWVARSVREQ RPFFTPMPFT GLVKTWAILS LISVATAIST MGLGFITNGK LPDIKGWCDQ
FIVFFVVLNL IRDGAAARRV AVYMMVGTLL VICSGFTEWL DKRHYDRIDK ARLLGPQNQP
NDLSAFIVYG FGIPGALIIC YMWRLRTWVV ATPMLLVTAR VLLATFSRGG LIGMGAVVAA
LLLIRGRVLF ATIAVAGTLL VQVVPEVLPD SMNARMSQTS EPSGELDKSS QTRLILWNAA
IAITLENPIF GTGFHTFRVI KGMYTEIPVH ESDNHNMFLF ICSQMGLPTL FVFLLIFARL
AYVGVSLHKH ALHPFDKAIG LGGVGLAAGV MSINMFGSRM TDTIVMGYVW ITIAVISHLR
KEQLARQADA SGRVDVGPAP GAST