Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_3076 |
Symbol | |
ID | 6162639 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 3405272 |
End bp | 3406048 |
Gene Length | 777 bp |
Protein Length | 258 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641665851 |
Product | polysaccharide deacetylase |
Protein accession | YP_001792101 |
Protein GI | 171059752 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
| |
Fosmid Coverage information |
Num covering fosmid clones | 57 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTATCACG GCCTCTACGC CAACGAGCGG GAATACCAGG CCATCGATGC GGCCGATCGC CCCTACGCCG TATCGACCCA GCGGTTCACC GAACAGCTGC AAGCCATGCA GCGCAGCAGG CTGAACATCA TCGATCCCGG CCAGCTCGGC AGCCCGGCGA TGTCGGCGGG CGGTGTCGTG CTCACCTTCG ACGACGGCCA CGCCAGCAAC CATCGGCATG CCCTGCCGAT CCTGCAGCAG CTCGGCTTGA AGGCGGTGTT CTTCGTCACC TCCGATTTCA TGGAGCGACG CCCCGGCTTC TGCAGCTGGG CGCAACTGCG CGAGATGGCC GATCAGGGCA TGACCATCGG CTCGCACGGC CGAACGCACC GCTTTCTCGA CGATCTCTCC GATGCCGAGG CGATGGCCGA ACTGTCCGAT TCGAAACAGG CCATCGAGCA GGGCATCGGG CGCGGCATCG ACCAGGTGTC GTTCCCCGGC GGGCGTTTCA GTGTGCGGCA GCTGGCCTTG TGGCAACCGC TCGGCTATCG CGCATTCCAC TCCTCGCGCG TGGCGGCCGC CCCGGCGCGC CCCGTGCAGC CGGGCGACGT CCTGCCGCGG CTCGCGATCC GCCGTGACAC CTCGCTGCCG GACGTGCTTG CGATGGCTCA GGCCGATCGC CGCTGGTTGA TGCGCGCGAC CGCGCTCGCG TCGGCCAAAC AACTGGTGCG CCGGCTTGCG GGCAATCGCC TTTATCACCA CCTGTATGAA CGACTTCATC CCCAGACGCG TGGCTGA
|
Protein sequence | MYHGLYANER EYQAIDAADR PYAVSTQRFT EQLQAMQRSR LNIIDPGQLG SPAMSAGGVV LTFDDGHASN HRHALPILQQ LGLKAVFFVT SDFMERRPGF CSWAQLREMA DQGMTIGSHG RTHRFLDDLS DAEAMAELSD SKQAIEQGIG RGIDQVSFPG GRFSVRQLAL WQPLGYRAFH SSRVAAAPAR PVQPGDVLPR LAIRRDTSLP DVLAMAQADR RWLMRATALA SAKQLVRRLA GNRLYHHLYE RLHPQTRG
|
| |