| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3025 |
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| Symbol | |
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| ID | 6160847 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 3344019 |
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| End bp | 3345131 |
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| Gene Length | 1113 bp |
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| Protein Length | 370 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641665800 |
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| Product | inner-membrane translocator |
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| Protein accession | YP_001792050 |
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| Protein GI | 171059701 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4603] ABC-type uncharacterized transport system, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAGCA TCTCGATCCC GGCCAGCGCG CCGATCACGG CGCCGTCGCC GGTCGCGCTG
AAAGTGCGTG CGATGTTCGA CGCGCTGCTG CCAGCCGGCG CCGCGCTGTT GCTCACGGTG
CTGCTGTTTT CGCTGGCGGT GGCGCTGGCG GGCTTCAATC CGGGCGAGGT CTGGTCGTTG
ATCTTCCTCG GCGGTTTCGG CGACGCTTTT GCGTGGCAGA ACACGCTGCA GCGCGCCGCG
CCGCTGCTGC TCACCGGCCT CGCGGTGGCG CTGCCGGCGC AGGCCGGGCG CGTGATCATC
GGCGCCGAAG GGGCGTTGGT GCTTGGCGGG CTGGTGGCGT CGGCCTTCGG CAACGTGCTG
GCCGATGCGA AGGTGCCGGC ACTGATCGTC TGGCCGGCGA TGGCGCTGGC CGGGGCGCTG
GCCGGTGGCA TCTGGATCGG CGGGGTCGGC TGGCTGCGCG AGCGGCGCGA GGTCAACGAG
ACCATCGCCA GCCTGCTGAT GTCGTTCATC GCCATCGCGC TGTTCAACCA GTGTGTCGAG
ACGGTGCTGC GCGACCCGGC CAGCTTGAAC AAGCCTTCGA CGCGCACGCT GCCCGAGGCG
CTGATGCTGC CGCCGATGCC CGGGCTGGAC GTGCACTGGG GCCTGGCGGT CGGCATCGTG
GTGGCGCTGA TCGCCTGGGG CGTGATGCGA TTGACGCCGC TGGGCCTGGC GCTGCGCATC
GCCGGTGGCA ACCCGCGTGC GGCTCTCGGC GTCGGCCTGC CGGTGGCGTG GCTGACGGTC
GGCGCCTGCG TGGCCGGTGG TGCCTGTGCC GGCCTGGCGG GTGCGGTCGA AGTGGCGGCG
GTACACGGCG CGGCCAACGT GTCGCTGGTG GCGGGTTACG GCTACAGCGG CATCCTGATC
GCGTTCGCGG CGCGCTTCTC GCCGGGTGGT GTGATCCCGG TGGCGATCCT GGTCGGCGGC
ATCGCCGCCA GCGGCAGCTT GCTGCAACGC CGGCTCGGCC TGCCCGATGC GTCGGTCACG
GTGCTGCTGG GCTTCGCCTT CGTCGCGCTG ATCGGCTGCG AGACATTGCG CGGCCGCACG
TTCACTCTGC GCCGCGGCGC TCGGAAAGGT TGA
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| Protein sequence | MSSISIPASA PITAPSPVAL KVRAMFDALL PAGAALLLTV LLFSLAVALA GFNPGEVWSL
IFLGGFGDAF AWQNTLQRAA PLLLTGLAVA LPAQAGRVII GAEGALVLGG LVASAFGNVL
ADAKVPALIV WPAMALAGAL AGGIWIGGVG WLRERREVNE TIASLLMSFI AIALFNQCVE
TVLRDPASLN KPSTRTLPEA LMLPPMPGLD VHWGLAVGIV VALIAWGVMR LTPLGLALRI
AGGNPRAALG VGLPVAWLTV GACVAGGACA GLAGAVEVAA VHGAANVSLV AGYGYSGILI
AFAARFSPGG VIPVAILVGG IAASGSLLQR RLGLPDASVT VLLGFAFVAL IGCETLRGRT
FTLRRGARKG
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