Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_2993 |
Symbol | |
ID | 6163840 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 3296856 |
End bp | 3298493 |
Gene Length | 1638 bp |
Protein Length | 545 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 641665770 |
Product | vinylacetyl-CoA Delta-isomerase |
Protein accession | YP_001792020 |
Protein GI | 171059671 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG2368] Aromatic ring hydroxylase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 90 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCACGCTG CCCCGCCCAC CCGGACCGCC GCCACCGCCG GCCTGATGAC CGCGGTCGAC TACCGCGAAT CGCTGCGCCG CTTGCGGCCC GTGGTCTACG TCGACGGCCA GCGGATCGAG TCGGTGGCCG ATGCGCCGAG CCTGCAGCCG GGCATCAACG CGCTGGGCGT CACCTACGAC CTGGCGCACG ACCCGGCGAT GGCGCGGCTG ATGACGGCGC GCCACACGCG CAGCGGCCGC ACCGTCAACC GCATGCTGCA CGTCAACGAG TCGGCCGGCG ACCTGCTCGA CAAGCTCGAG GCGGTGCGCC TGCTGTGCCA GGAAACCGGC TGCGCGCAGC GCTACCTGGC GCACGACGCG CTCAACGCCA TCGGCCAGGT CAGCGCCCGC ATCGACGACG CCCGCGGCAG CACCGAACAC CGCGCCCGTT TCGAGGCCTA CCTGCAGCGC GTGCAGACCG AGGACCTGGC GCTGGGCATC GCGATGACCG ACGCCAAGGG CGACCGCTCG CGCCGCCCGC ACCAGCAGGC CAATCCCGAC ACCCATGTGC ACGTGGTCGA GCGCAAGCCC CAAGGCATCG TGATCTCGGG CACCAAGGCG ATCGTCACGG GTGCGCCGTA CATGCACGAG TTCCTCGTCA TGCCCGGTCG CAACATGAGC CGCGAGGACG CCGATTTCGC GGTCTGCTGC GCGGTGCCGG TGGATGCGCC GGGCATCACC ATCGTGGCGC GCCCGGCGGG GCGGCCGGGC GAGAAGGTCG AACACGGCGC GCCGCTGTTC TCGCGCCGCT ACGGGCAGTC GACCGGCGTG GTGATCTTCG ACCGAGTGTT CGTGCCGTGG GAGCGCGTGT TCTACGCCGG TGAATGGGAG CACTCGGGCA CGCTGACCTA CCACTACGCC ACCCACCACC GCCACAGCTG CATCGGTGCG CGGGCCGGTT TCGGCGACCT GCTGATCGGC GCGGGCGCGC TGATGTGCGA GGCCAACGGC TTCGACCCAG GCCAGACGTC GAGCCTGCGC GAGCCGATGG TCGAGCTGAT CAAGATCACC GAAGGCTTCT TCGCCTGCGG CGTGGCGGCC AGCGTCTACG GCACGGCCGA TCAACACAGC GGGACCTTCA TGCCCGAGCC GGTGTTCGCC AACATCGGCA AGCTGCTGCT GGCCACGCAG ATCTACGACA TGCACCGGCT CGCGCACGAG GTCTCGGGCG GCCTGATCGT GGCGCTGCCC GGGCCCGACG AGGACCACAA CCCGGCTACC GCCGCCACGC TGGCCGAGGT GCTGCGCGCC AATCCGGCGG TGCCCTACGA CAAGCGCATC GAGGTGGCGC GCTTCGTCGA GGACCTGACG GCGTCGTACC AAGCCGGCTG GTATTCGGTC ATCAGCCTGC ACGGCGGCGG CTCGCCGGCG GCGATGAAGC AGGAGATCTG GCGCAACTAC CCGCTGGGCA ACAAGGTCGA TCTGGTCGAG CGCCTGCTCG ACCGTGGCGT GCTCGCGCCC ACCGAAGGCG GCGACACCCG CGCCATCACC CGCAACCGCC AGCCCGGGCG CTGCTGCGAC AGCGGCTGCA CGCAGCCCGG CCAGGCGGTG ATGGTGGCCT TGCCGGTGTC GACGCGTGAC GATGTCGCAG GCGCCTAG
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Protein sequence | MHAAPPTRTA ATAGLMTAVD YRESLRRLRP VVYVDGQRIE SVADAPSLQP GINALGVTYD LAHDPAMARL MTARHTRSGR TVNRMLHVNE SAGDLLDKLE AVRLLCQETG CAQRYLAHDA LNAIGQVSAR IDDARGSTEH RARFEAYLQR VQTEDLALGI AMTDAKGDRS RRPHQQANPD THVHVVERKP QGIVISGTKA IVTGAPYMHE FLVMPGRNMS REDADFAVCC AVPVDAPGIT IVARPAGRPG EKVEHGAPLF SRRYGQSTGV VIFDRVFVPW ERVFYAGEWE HSGTLTYHYA THHRHSCIGA RAGFGDLLIG AGALMCEANG FDPGQTSSLR EPMVELIKIT EGFFACGVAA SVYGTADQHS GTFMPEPVFA NIGKLLLATQ IYDMHRLAHE VSGGLIVALP GPDEDHNPAT AATLAEVLRA NPAVPYDKRI EVARFVEDLT ASYQAGWYSV ISLHGGGSPA AMKQEIWRNY PLGNKVDLVE RLLDRGVLAP TEGGDTRAIT RNRQPGRCCD SGCTQPGQAV MVALPVSTRD DVAGA
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