Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_2909 |
Symbol | |
ID | 6160239 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 3204161 |
End bp | 3208090 |
Gene Length | 3930 bp |
Protein Length | 1309 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 641665688 |
Product | type IV fimbrial biogenesis protein PilY1 |
Protein accession | YP_001791939 |
Protein GI | 171059590 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3419] Tfp pilus assembly protein, tip-associated adhesin PilY1 |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 0.940828 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCATCC GCCCCACAAG CCCTGCAGCG CGCGGCGCCC GGCTCACATC GAAGGCCGGG CCACGGGCCC TGCGCAGCCC GATCCTGTCC GCCGTGCTGC TGGTGCTGCT GGGCAGCACC TGGGCCGCCA CGCCCGACAT CTCGAACGTG CCGCTGAGCT CGACGTCGAC CACGACGGCC AAGCCCAACA TCATGTTCAT CCTCGACGAC TCGGGCTCGA TGGCCTGGGA CTTCATGCCC GACGAGCTCG ACGACAACAA CGACCAGGTC GGCGACAACG TCTACGGCTT CAGGTCGGCG CAATGCAACG GCGTGGCCTA CAACCCCGAC ATCACGTACA CCCCACCGGT CCGGATCGAC CCGACCACCG GCGCGGTCAG CAACTACGCC GACGCCAGCT TCACGGCGGC GCGCTCGGAC GGCTTCAGCA CCTCATCGGG TGTCACAGAT CTGACGGGCC GCGTCTACTA CCACTACCTC GGCAGCGAGC CCGCGCTGTC GTGGCGCTAC GGCAGCAACG GCACGGTCGA CAGGACCACC ACGTTCTTCA CCGAGTGCAT GACCGCGATC CCCGCTGACG GGGCCGGCAA CGCGCGCTTC GAACAGCGCA CGATGAGCAA CGCATCGACC GATGCACAGA ACTACGCCAA CTGGTATTCC TACTACCGCA AGCGCCAGCT GACCATGCGC TCGGCGGCAG GCCGGGCCTT TGCCGACCTG TCGAATGCCT ACCGCGTCGG CTTCACCAGG ATCAGCCAGA CGGGTGTCAC CGGCACCAGC TTCCTGAACG TCGGCGACTT CGACACGGCA CAGAAAACCA GCTTCTTCAA CCTGCTCTAC ACCAGCGGCA TCAGCGGCAG CACGCCCTTG CGCGGCGCAC TCTCCAAGGT CGGGCGCTAC TACGGCAACG TGATCGCCGG CCAGACCGAC CCGGTGCAGT ACTCGTGCCA GCGCAACTAC GCCGTGCTGT CCACCGATGG TTACTGGAAC ACCGGAAACG AGAGCACCAC CTACCGGGCG CTGGCGCTCG ACGGCACCAC GCTCGTCGGC CAGCAGGACG GCACCGAAGT CCGGCCGATG AAGGACGGCA GCACCGTGAC CGTCACGCGC GTGACGATCT CGGGCTCGGT CGACCGCACG CAGACGATCC TGGATCGGCG CACCGACATC ACGCTGCGGC GCACCGCCAA CACCATCACC AACAACAGCT GCAACTCCGG CAACGGCCGG CGCGTCTCCC AGCAGGGTCA GCGCCGGATC GACACCGCAT CGTTCCAGCG CACGCTCGTC CAGGACGTCA CCAACCGGAC CACCGTCACG CAGGTGACCA CCAACGGCAT CCCCGCCAAC CCGACCTCGA CCACCACGGC CAACGCCGCG CAGGTCAGCG CGACCGACGG CAGCGTCACG GCCACGACCA CCGGCACCTG GAACAACAAC GGCGGCTCGA ACACCAACTG CATTGCCCGG TCGAGCCTGC CGACCGGCTG GAGCACCGGC ACGGTGTACT ACACACCGGG CGTCGACGGC ACCGAGCTGA GCCGCAACAC GGTCACCCTC GCCACCGGCA CGCCGACCGT GCTGAGCACG GGCCCCCTGG CCGACGCCGG CACGACGGAG ACCACCGCCA CCACCGCCGG CGACAGCAAC TCGCTGGCCG ACATCGCCCA GTACTACTGG AAGACCGACC TGCGCCCCGA CATGGTCGAC AACGTGCCCA CCAGCGGTGA CGACAGCGCA GCGCACCAGC ACATGACCAC CTTCACGATC GGCCTCGGCC TGAAGGGCAC GCTCAGCTAC GACCGCAACT ACCTGACGCA GACCACCGGC GACTTCGCCG ATCTGCGCAG CGGCGCGAAG AACTGGCCGG TGCCACGCGG CACCACCGGC GGCAGCGAAA ACGCCACCCA CATCGACGAC CTCTGGCACG CCGGCGTCAA CGGCCGCGGC CAGTACTTCT CGGCGGCCGA TCCGAACCAG CTCGACGACG CCATCTCGAC CACCCTGAGC GCGATCCGTC GGGTGACCGA ATCCGGCGCA GCGGCGGCCG CCAGCACGCT CACGCCCGTG ACCGGCGACG ACTGGGTCTT CCTGCCCAGC TTCACCACGA TCGACTGGAC CGGCGACCTG CGCGCCTTCA AGTTCACCTT CAACAGCGCC AATGAACTGG TCGCGCCCAA CACCGCCGCC GGCAACGAGA TCTGGAGCGC CGGCAACCAG CTGCGGGCGC GCACATCGTC ACGCCGCATC CTGTTCAACA ACGCGGGCAC GCTCGGGGAC TTCACCTACG ACAACCTGAC CGCGGCCGGC CAGGGCGCGC TGTTCGACAA CCGCTGCGGC AGCGCCCTGA GCTCGCCCGC GACCAACCTG AGCCAGTGCG CCACCCTGAC CCCCGCCGCA CTGGCCAAGG TCACGGGGGC CAATCTGGTC AACTTCCTGG CCGGTGACGC CACGCTCTAC CAGAGCGCCG CCGATGTCGA CAACCAGGTC TTCCGCACCC GCAACGGGCT GCTGGGCGAC TTCGTCAACG CCTCGCCGGT GTATGTGGGC AAGCCGCCGT TCCGCTACGC GGACGCCGAC TACGCCAGCT TCGTCAGCGC ACAGGCCAAC CGGACCAAGG TGGTCTACGC CGCCGCCAAC GACGGCATGC TGCACGCCTT CAAGGTCGGC ACCGGCGCCG GCGACGGCAC CGGCGGTGCC GAGCTGTGGG CCTTCGTGCC GAGCGCGGTG ATGCCCGAGA TGTGGCGCCT GGCCAGCGAA AGCTACGACA CCGACCACCG CTTCTTCGTC GACGCCACGC CCAACGTCTC GGACATCTAC GACAGCGCCG CCGGACGCTG GCGCACCATC CTGGTCGGCG GCCTCGGTGC GGGCGGGCGC AGCTACTACG CGCTCGACGT GACGACGCCG GAGTCTCCCG TGCTGCTGTG GGAATTCAGC GACGCCAACC TCGGCCTCAC CTACGGCAAC CCGGTGGTCA CGAAGGATGC GACGGGCACC TGGGTGGTGG TGTTCACCTC CGGCCTCAAC AACAACGCCG GCTCCGGCGA CGGCGTCGGC CGCCTCTACG TGGTCAACGC CGTGACCGGC GCGCTGGTCC GCACGGTCGC CACCAGCGCC GGCGATGTCG GCACCCCCAG CAACCTGGGC CGCCTGAACG CCTGGATCAA CGCCGACTCC GACAACACGG CGCTGCGTTT CTACGCCGGC GACATGCTCG GCAACGTCTG GCGCTTCGAC CACGACGACC GCCTGGCCCC GGCCGGCCGT GAAGCCGTGC TGCTGGGCAA GGCCCAGAGC GCCGACGGCA CGGCCCAGCC GATCACCGGC AAGCTGGTGC TGACCGAAGC CAGCATCAAC GGCCTGCAGA CGCCGGTGGT GAGCTTCGGC ACCGGCCGCC TGCTCAATCT CGATGACCTC ACCAACACCA CCCTGCAAAG CATCTACTCG ATCAAGGACA CCCTCGGCGA AACCGGCGTG GGCGTGTTGC GCGACACCGG CGCCGCCCTG GTGCAGCAGA CCCTCAACAG CAGCCGCGGC ATCGACACCG TCGCGCCGGT GGACTGGGGC ACGAAGAACG GCTGGTACGT CGACCTCACG GTGTCGAGCA AGGAGCGCGT GCACCTCGAC GGCGTGCAGC TGGCCTCGGG CGTGCTGGCC TTCGCCTCCA CCGTGCCGAC CGCCGACGCC TGCTCGCAAG GCGGCGTCTC CTACCTCTAC CAGTTCGACC TGACCAACGG CAACGTGCTC GGCACGTCGT CGTTCACCAC CATGATCGTC GGCCTGAACC GGGTCATGAG CATCAACGGC AAGGTCAGCG CCATCGTGAC CACGCAGGAC CAGAAGACCA CGCTGACGGC CGGCGGCGGC GGCTCGGTGT CGCCGGGCAA CACCGTCAAG CGCTCGTCGT GGCGCGAACT GACGGACTGA
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Protein sequence | MSIRPTSPAA RGARLTSKAG PRALRSPILS AVLLVLLGST WAATPDISNV PLSSTSTTTA KPNIMFILDD SGSMAWDFMP DELDDNNDQV GDNVYGFRSA QCNGVAYNPD ITYTPPVRID PTTGAVSNYA DASFTAARSD GFSTSSGVTD LTGRVYYHYL GSEPALSWRY GSNGTVDRTT TFFTECMTAI PADGAGNARF EQRTMSNAST DAQNYANWYS YYRKRQLTMR SAAGRAFADL SNAYRVGFTR ISQTGVTGTS FLNVGDFDTA QKTSFFNLLY TSGISGSTPL RGALSKVGRY YGNVIAGQTD PVQYSCQRNY AVLSTDGYWN TGNESTTYRA LALDGTTLVG QQDGTEVRPM KDGSTVTVTR VTISGSVDRT QTILDRRTDI TLRRTANTIT NNSCNSGNGR RVSQQGQRRI DTASFQRTLV QDVTNRTTVT QVTTNGIPAN PTSTTTANAA QVSATDGSVT ATTTGTWNNN GGSNTNCIAR SSLPTGWSTG TVYYTPGVDG TELSRNTVTL ATGTPTVLST GPLADAGTTE TTATTAGDSN SLADIAQYYW KTDLRPDMVD NVPTSGDDSA AHQHMTTFTI GLGLKGTLSY DRNYLTQTTG DFADLRSGAK NWPVPRGTTG GSENATHIDD LWHAGVNGRG QYFSAADPNQ LDDAISTTLS AIRRVTESGA AAAASTLTPV TGDDWVFLPS FTTIDWTGDL RAFKFTFNSA NELVAPNTAA GNEIWSAGNQ LRARTSSRRI LFNNAGTLGD FTYDNLTAAG QGALFDNRCG SALSSPATNL SQCATLTPAA LAKVTGANLV NFLAGDATLY QSAADVDNQV FRTRNGLLGD FVNASPVYVG KPPFRYADAD YASFVSAQAN RTKVVYAAAN DGMLHAFKVG TGAGDGTGGA ELWAFVPSAV MPEMWRLASE SYDTDHRFFV DATPNVSDIY DSAAGRWRTI LVGGLGAGGR SYYALDVTTP ESPVLLWEFS DANLGLTYGN PVVTKDATGT WVVVFTSGLN NNAGSGDGVG RLYVVNAVTG ALVRTVATSA GDVGTPSNLG RLNAWINADS DNTALRFYAG DMLGNVWRFD HDDRLAPAGR EAVLLGKAQS ADGTAQPITG KLVLTEASIN GLQTPVVSFG TGRLLNLDDL TNTTLQSIYS IKDTLGETGV GVLRDTGAAL VQQTLNSSRG IDTVAPVDWG TKNGWYVDLT VSSKERVHLD GVQLASGVLA FASTVPTADA CSQGGVSYLY QFDLTNGNVL GTSSFTTMIV GLNRVMSING KVSAIVTTQD QKTTLTAGGG GSVSPGNTVK RSSWRELTD
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