Gene Lcho_2877 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_2877 
Symbol 
ID6159850 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp3167264 
End bp3169240 
Gene Length1977 bp 
Protein Length658 aa 
Translation table11 
GC content73% 
IMG OID641665656 
Producthelicase c2 
Protein accessionYP_001791907 
Protein GI171059558 
COG category[K] Transcription
[L] Replication, recombination and repair 
COG ID[COG1199] Rad3-related DNA helicases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value0.679539 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGCCAG TGAGCGCGCT GCGCGAAGAA GTCGCGCTGG CCTTTGCCGC GACCGGTGTG 
CTGGCCCGCA CGGAAAAGCA GTTCCGCCCC CGCGAAGTGC AGACCCGGCT GGCCGACGCC
GTCGCTCACG CGCTCGAGGA ACGCAGCGTG CTCGTGGCCG AAGCCGGCAC CGGTGTCGGC
AAGACCTACG CCTACCTCGT GCCGCTGCTG CTGTCGGGCC TGCGCGCGCT GGTCAGCACC
GCCACCAAGA GCCTGCAGGA TCAGCTCTAT CTGCGCGACC TGCCGCGGCT GGTGCAGCTG
CTGGGCCTGC CGGTGCAGGT CGCCTTGCTG AAGGGCCGCG CGTCGTATCT GTGCCTGCAC
CGCCTCGACC ACGCCCGCCA CACCGCCGAG CTGCCCGATC GCCATTCGCT GCGGGTGCTC
GCGCGCGTCG AACAATGGTC CAAGACCACC CGCAGCGGCG ACCTGGCCGA ACTCGAGGTG
CTGGACGAAC GCTCGCCGGT GATCCCGCTG GTGACCTCGA ACCGCGAGAA CTGCCTGGGC
AGCGACTGCC CGCAGTTCCG CCAATGCCAT CTCGTGCAGG CGCGCCGCGA GGCGATGCAG
GCCGACATCG TGGTCGTCAA TCACCACCTG TTCTTTGCCG ACATGGCCCT GCGCGACACC
GGCATGGCCG AGCTGCTGCC GAGCGTCGAC GCGGTGGTGT TCGACGAGGC GCACCAGCTC
AACGAGGCCG GCGTGCAGTT CCTCGGCCGC CACATCGGCA CCGGCCAGCT GCTCGACATC
GGCCGGGACC TGCTCGCCGC CGGCCTGGCC CATGCCCGCG GCCTGCAGGA CTGGCAGGCC
TTGGCCGGTG CCGTCGAACA GGGCGCGCGC CGCCTGCGGC TGGCCTGCGC CGGCACCTTG
CGCGCGGCCG GTCGCCTGCG CTGGGACGAG CGCGGGCTGT CGGAAGACTT TGTCGCCGCG
CTGACCGATG CCCGCGCGGC CTGCGTGGCG GCGTCGGACG CGCTGGGCGT GGTGGCCGAC
GCCGCGCCCG ATCTCGCCAA GCTGCAGGAG CGCGCGCAGG CGCTGGCCGC ACAACTGGCG
GCGTTTCTCG GCCCGGTCGA ACATGGCCAC GTGCGCTGGA TCGACCTGAC GCTGCACCAG
GCGCGGCTGG CCGAATCGCC GCTCGACATC CGCGAGACGC TGCGCGAGCA GATCGAGGGC
GAGCGGCGCG CCTGGATCTT CACCTCGGCC ACGCTGGGCG ATGACCCGGC GCTGAGCTGG
TTCACGCGCA GCGCCGGCGT CGAGGATGCC CACACGCTGC GCGCCGGCAG CCCGTTCGAC
TACGGGCGCA ACGCGCGGCT GTTCGTGCCG GCGCGCTTCC CGCGGCCCAG CGAGGCGACG
CATCCGGCCG CCGTGAGCCA GCTGGCTGCG CGCTGCGCGC AGGCGCTGGG CGGACGCTGC
TTCGTCTTGA CGACCACCTT GCGGGCGCTG CAGGGCATCG GCGCCGACCT GCGCGCCCGT
CTGGCGACCC TGCCCGATCC GATCGACGTG CTGGTGCAGG GCGAAGCGCC CAAGCGGGCG
CTGATGGCGC GCTTCCTGGC CACGCCGCGG GCGGTGCTGG TGGGCTCGCA CAGCTTCTGG
GAGGGCATCG ACGTGCCGGG CTCGGCGCTG CAGTGCGTGC TGATCGACAA GCTGCCGTTC
CCGCCGCCCA ACGATCCGTT GGCCGAGGCG CGCTGCCGCA GCCTGGAGGC GCAGGGCGGC
AAGCCGTTCG ACGACTACTT CATCCCCGAG GCGGCGGTGG CGCTCAAGCA GGGCGCCGGG
CGCCTGATCC GCAGCGAGAC CGATCGCGGG CTGCTGGTGA TCTGCGACAC CCGCCTGCTG
ACGATGAACT ACGGGCGCCG CCTGATGGGC GCGTTGCCAC CGATGCCGCT GGTGGGCGAC
GAGGCCGAGG CGCTGCAGTG GCTGGCCTCG CTGGCCCGGC CTGCCGAGCC GGCCTGA
 
Protein sequence
MTPVSALREE VALAFAATGV LARTEKQFRP REVQTRLADA VAHALEERSV LVAEAGTGVG 
KTYAYLVPLL LSGLRALVST ATKSLQDQLY LRDLPRLVQL LGLPVQVALL KGRASYLCLH
RLDHARHTAE LPDRHSLRVL ARVEQWSKTT RSGDLAELEV LDERSPVIPL VTSNRENCLG
SDCPQFRQCH LVQARREAMQ ADIVVVNHHL FFADMALRDT GMAELLPSVD AVVFDEAHQL
NEAGVQFLGR HIGTGQLLDI GRDLLAAGLA HARGLQDWQA LAGAVEQGAR RLRLACAGTL
RAAGRLRWDE RGLSEDFVAA LTDARAACVA ASDALGVVAD AAPDLAKLQE RAQALAAQLA
AFLGPVEHGH VRWIDLTLHQ ARLAESPLDI RETLREQIEG ERRAWIFTSA TLGDDPALSW
FTRSAGVEDA HTLRAGSPFD YGRNARLFVP ARFPRPSEAT HPAAVSQLAA RCAQALGGRC
FVLTTTLRAL QGIGADLRAR LATLPDPIDV LVQGEAPKRA LMARFLATPR AVLVGSHSFW
EGIDVPGSAL QCVLIDKLPF PPPNDPLAEA RCRSLEAQGG KPFDDYFIPE AAVALKQGAG
RLIRSETDRG LLVICDTRLL TMNYGRRLMG ALPPMPLVGD EAEALQWLAS LARPAEPA