Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_2877 |
Symbol | |
ID | 6159850 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 3167264 |
End bp | 3169240 |
Gene Length | 1977 bp |
Protein Length | 658 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 641665656 |
Product | helicase c2 |
Protein accession | YP_001791907 |
Protein GI | 171059558 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG1199] Rad3-related DNA helicases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 0.679539 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGCCAG TGAGCGCGCT GCGCGAAGAA GTCGCGCTGG CCTTTGCCGC GACCGGTGTG CTGGCCCGCA CGGAAAAGCA GTTCCGCCCC CGCGAAGTGC AGACCCGGCT GGCCGACGCC GTCGCTCACG CGCTCGAGGA ACGCAGCGTG CTCGTGGCCG AAGCCGGCAC CGGTGTCGGC AAGACCTACG CCTACCTCGT GCCGCTGCTG CTGTCGGGCC TGCGCGCGCT GGTCAGCACC GCCACCAAGA GCCTGCAGGA TCAGCTCTAT CTGCGCGACC TGCCGCGGCT GGTGCAGCTG CTGGGCCTGC CGGTGCAGGT CGCCTTGCTG AAGGGCCGCG CGTCGTATCT GTGCCTGCAC CGCCTCGACC ACGCCCGCCA CACCGCCGAG CTGCCCGATC GCCATTCGCT GCGGGTGCTC GCGCGCGTCG AACAATGGTC CAAGACCACC CGCAGCGGCG ACCTGGCCGA ACTCGAGGTG CTGGACGAAC GCTCGCCGGT GATCCCGCTG GTGACCTCGA ACCGCGAGAA CTGCCTGGGC AGCGACTGCC CGCAGTTCCG CCAATGCCAT CTCGTGCAGG CGCGCCGCGA GGCGATGCAG GCCGACATCG TGGTCGTCAA TCACCACCTG TTCTTTGCCG ACATGGCCCT GCGCGACACC GGCATGGCCG AGCTGCTGCC GAGCGTCGAC GCGGTGGTGT TCGACGAGGC GCACCAGCTC AACGAGGCCG GCGTGCAGTT CCTCGGCCGC CACATCGGCA CCGGCCAGCT GCTCGACATC GGCCGGGACC TGCTCGCCGC CGGCCTGGCC CATGCCCGCG GCCTGCAGGA CTGGCAGGCC TTGGCCGGTG CCGTCGAACA GGGCGCGCGC CGCCTGCGGC TGGCCTGCGC CGGCACCTTG CGCGCGGCCG GTCGCCTGCG CTGGGACGAG CGCGGGCTGT CGGAAGACTT TGTCGCCGCG CTGACCGATG CCCGCGCGGC CTGCGTGGCG GCGTCGGACG CGCTGGGCGT GGTGGCCGAC GCCGCGCCCG ATCTCGCCAA GCTGCAGGAG CGCGCGCAGG CGCTGGCCGC ACAACTGGCG GCGTTTCTCG GCCCGGTCGA ACATGGCCAC GTGCGCTGGA TCGACCTGAC GCTGCACCAG GCGCGGCTGG CCGAATCGCC GCTCGACATC CGCGAGACGC TGCGCGAGCA GATCGAGGGC GAGCGGCGCG CCTGGATCTT CACCTCGGCC ACGCTGGGCG ATGACCCGGC GCTGAGCTGG TTCACGCGCA GCGCCGGCGT CGAGGATGCC CACACGCTGC GCGCCGGCAG CCCGTTCGAC TACGGGCGCA ACGCGCGGCT GTTCGTGCCG GCGCGCTTCC CGCGGCCCAG CGAGGCGACG CATCCGGCCG CCGTGAGCCA GCTGGCTGCG CGCTGCGCGC AGGCGCTGGG CGGACGCTGC TTCGTCTTGA CGACCACCTT GCGGGCGCTG CAGGGCATCG GCGCCGACCT GCGCGCCCGT CTGGCGACCC TGCCCGATCC GATCGACGTG CTGGTGCAGG GCGAAGCGCC CAAGCGGGCG CTGATGGCGC GCTTCCTGGC CACGCCGCGG GCGGTGCTGG TGGGCTCGCA CAGCTTCTGG GAGGGCATCG ACGTGCCGGG CTCGGCGCTG CAGTGCGTGC TGATCGACAA GCTGCCGTTC CCGCCGCCCA ACGATCCGTT GGCCGAGGCG CGCTGCCGCA GCCTGGAGGC GCAGGGCGGC AAGCCGTTCG ACGACTACTT CATCCCCGAG GCGGCGGTGG CGCTCAAGCA GGGCGCCGGG CGCCTGATCC GCAGCGAGAC CGATCGCGGG CTGCTGGTGA TCTGCGACAC CCGCCTGCTG ACGATGAACT ACGGGCGCCG CCTGATGGGC GCGTTGCCAC CGATGCCGCT GGTGGGCGAC GAGGCCGAGG CGCTGCAGTG GCTGGCCTCG CTGGCCCGGC CTGCCGAGCC GGCCTGA
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Protein sequence | MTPVSALREE VALAFAATGV LARTEKQFRP REVQTRLADA VAHALEERSV LVAEAGTGVG KTYAYLVPLL LSGLRALVST ATKSLQDQLY LRDLPRLVQL LGLPVQVALL KGRASYLCLH RLDHARHTAE LPDRHSLRVL ARVEQWSKTT RSGDLAELEV LDERSPVIPL VTSNRENCLG SDCPQFRQCH LVQARREAMQ ADIVVVNHHL FFADMALRDT GMAELLPSVD AVVFDEAHQL NEAGVQFLGR HIGTGQLLDI GRDLLAAGLA HARGLQDWQA LAGAVEQGAR RLRLACAGTL RAAGRLRWDE RGLSEDFVAA LTDARAACVA ASDALGVVAD AAPDLAKLQE RAQALAAQLA AFLGPVEHGH VRWIDLTLHQ ARLAESPLDI RETLREQIEG ERRAWIFTSA TLGDDPALSW FTRSAGVEDA HTLRAGSPFD YGRNARLFVP ARFPRPSEAT HPAAVSQLAA RCAQALGGRC FVLTTTLRAL QGIGADLRAR LATLPDPIDV LVQGEAPKRA LMARFLATPR AVLVGSHSFW EGIDVPGSAL QCVLIDKLPF PPPNDPLAEA RCRSLEAQGG KPFDDYFIPE AAVALKQGAG RLIRSETDRG LLVICDTRLL TMNYGRRLMG ALPPMPLVGD EAEALQWLAS LARPAEPA
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