| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2876 |
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| Symbol | |
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| ID | 6159849 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 3166400 |
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| End bp | 3167254 |
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| Gene Length | 855 bp |
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| Protein Length | 284 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641665655 |
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| Product | putative transmembrane protein |
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| Protein accession | YP_001791906 |
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| Protein GI | 171059557 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4105] DNA uptake lipoprotein |
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| TIGRFAM ID | [TIGR03302] outer membrane assembly lipoprotein YfiO |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 0.676791 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCACCAGC CCGCGCCGGC GCCGATCAAC CGGCAAACCC AGATCATGTT CAAGTTCGTT
CAACCCCAAG GTTTGCGTGT GCTGACCGCG ACTGCCGTCG TGGCCGTGCT GCTGGCGGGC
TCGCTCGGCG GCTGCGCGGC CGATCCGAAG GCGCTGCCCG AGCACCAGAA TGTCGGCAAA
TTGTACGAAG AGGCCCGCGA GGAAGCCGCC GCCGGTGCGA GCGACCGCGC CATCAAGCTC
TACGAGCGCC TCGAAGGCCT GGCCGCCGGC ACGCTGTTGG CCCAGCAGGC GCAGCTCGAA
CGCGCCTTCC TGCACTACAA GATGCAGGAG AAGGCGCAGT CGCTGGCGAT CATCGAGCGC
TTTCTCAAGC TGCACCCGAC CAGCCCGGCG GCCGACTACG CCTATTACCT GCAGGGGCTG
ATCAACTTCA ACGACGACCT GGGCCTGTTC GGCAGCATCG TCAAGACCGA TCTGGCCGAG
CGCGATCAGC AGGCCTCGCG CGACGCCTAC CAGAGCTTCA AGCAGCTGGT CGATCGCTAC
CCCGACTCGC GTTATGCGCC GGATGCGCGG CTGCGCATCA ACTACATCAT CAACGCGCTG
GCGGCGCATG AAGTGCACGT GGCGCGCTAC TACTACCAGC GTGGCGCCTA TGTGGCGTCG
GCCAACCGGG CCCAGCAGGC GGTGCAGGAT TTCCGCGGCG TGCCCGCGGC CGAGGAGGCG
CTCTACCTGA TGGCGGCCAG CTACCACCAG CTCGGCATGG CGCCGCTGCG TGACGACGCC
TGGCGGGTGC TGCAGAACAA CTATCCGAAG AGCCGCTGGC TGAGTCAGCG CCTGGGCAGC
AGCGCGCTGC GCTGA
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| Protein sequence | MHQPAPAPIN RQTQIMFKFV QPQGLRVLTA TAVVAVLLAG SLGGCAADPK ALPEHQNVGK
LYEEAREEAA AGASDRAIKL YERLEGLAAG TLLAQQAQLE RAFLHYKMQE KAQSLAIIER
FLKLHPTSPA ADYAYYLQGL INFNDDLGLF GSIVKTDLAE RDQQASRDAY QSFKQLVDRY
PDSRYAPDAR LRINYIINAL AAHEVHVARY YYQRGAYVAS ANRAQQAVQD FRGVPAAEEA
LYLMAASYHQ LGMAPLRDDA WRVLQNNYPK SRWLSQRLGS SALR
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