Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_2873 |
Symbol | |
ID | 6159748 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 3162128 |
End bp | 3164338 |
Gene Length | 2211 bp |
Protein Length | 736 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 641665652 |
Product | pseudouridine synthase |
Protein accession | YP_001791903 |
Protein GI | 171059554 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 39 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACGACA TGCCCGACAC ACCCGACACG ACTGCGGCCA CGCCCTCGTC CGACTCGACC GCTGCACCTA AGCGTCGCCG CACCCGCAAG TCTGCGGACG ACACGGTCCC CGCGCTCGAC AGCAGCGCTG CGCAGGCGGC TGAGCTGCCG GTCGAGACGC CGGTCGAGCA GGCGCCCGCT GCTCAGGCGC CGGCCGAGAA GAAGCGCAGG GCTGCGCGTG CGTCGGTCGA GCCTGTCGCT GCTGCGGCCG AGGCGCCTGC TGAAGGCGTT GCCGCCCCGG CCCGCAAGCC GCGTGCGCCG CGGCGGGTCG ACGCACCGAG CGCCGATGCG TCGCCTGTCG AGGTGGTGGC TGCGCCTGAC GCCGTCGCGC CGGCTCCCGT GGCCGAGGCG TCGGTCCAGT CGGACGAGGG CGCCGATGCG GCAGTCCGTC CGGCTCGTCG CTCGCGCGGC CGCAAGACGC AAGGCGATGC CGTCGCCGTG GCGGCTGCCG ATGAGGCGTC GGCGGCTCCG TCCGGCGACG CGCCGACAGG CGACCGCGTC GAGGCCGCTG TCGAGCCGGG CGAAACGTCG CAGTCCGGTG CGGTCGTCCA GGCCCCCGAG CGCGACACGC GCCGCCGCGA TCGCCGCCAG AAGCAGCGTG AAGAGCGCCC GCGCGCGGTC GAGGCCGAGG CGGCTCCGGC GATCTTCACG CTGGGCGAGA TGCCCGAAGG CGAGGCCGGT GCTGCCGACG CCGCGCTTGC GCTGCCGGTC GATGCCGGGC AGTTGTTCGC TGCCGTGCTG TCGGGCGACT ACGACGTCGA GGACGCCGAA GAGGAAGAGG TTTCCGCCGA TCCGGGCAAG CGCGTGCTGC GTCCCGAGCC CGAGGCGCCC AAGCTGCACA AGGTGCTGGC GCAGGCGGGT GTCGGCTCGC GCCGCGACAT GGAACAGCTG ATCCAGGAGG GTCAGGTGTC GGTCAACGGC GAGGTGGCGC ACATCGGCAT GCGCATCGCC CAGGGCGACC AGATCAAGAT TGCCGGCCGG CCGATCAAGG TGCGCATCGC GCCGCCGCCG GCACGTGTGC TGGCCTATCA CAAGCCGGTC GGCGAGGTGG TCACGCACCA CGACCCCGAA GGCCGGCCGA CCGTGTTCCG CCGGCTGCCG CGCCTGCCGG TCGGCAAGTG GCTGTCGGTG GGGCGTCTGG ACATCAACAC CGAAGGCCTG CTGCTGTTCA CCAACTCGGG CGAACTGGCC AACCAGCTGA TGCACCCGCG TTTCGGCGTC GAGCGCGAGT ACGCGGTGCG CGTGCTGGGT TCGCTCGACG AGGCCGCGCG TGCGCGCCTG CTCGAAGGTG TCGAGATCGA GGGCCAGCGG GCCATGTTCA AGTCGATCGA TGACGGCGGC GGCGAAGGCA TCAACCACTG GTATCGCGTG GTGATCACCG AAGGCCGCAA CCGCGAGGTG CGCCGGCTGT TCGATGCGGT CGGCCTGACG GTCAGCCGCC TGATCCGCAT CCGCTACGCC ACCGTGGTGC TGCCGCGTGG CCTCAAGCGC GGCGTCTGGG TCGAACTCGA CGACAACGAC GTGCGCCAGA TCCGCCAGAT CGCCAACGGC CCGCGTGCCG AGCGTGGCGA GCGCGAAGAA CGGGGCCCGC GTGCCGACCG TGCAGAGCGT GGCCCGCGTG ACGGCCAGCA GCCCGGCCGC GGCGCCGGCA AGGGCAAGGG TGGCGGCCAA GGCCAGGGCC AGGGTCCGCA GATGTCCCAG GGCGGCCAGA ACGCGCCGGG TGGACGTGGC AATCAGCAGC GCGGCAACAA GCCGGTGGGC AAGGGCGGGC AGGGTGGACA GGGCTTCGAG CGCCGCGGTC CGGACGGCCG GCCCGGCGCG CCGCGCAGCG GGGGCGCCGA GTGGCGCGAC GAGCGCCCGG CGCGCGACGG CAACGTCAGT CGTGAGCCGC CGCGCGAGCG CGAAGACGGC GATTTCGGCG ACGATCCGCT GCACATCCCG AACCCGCTCG AGCAGACCTT CGATCGCCGT TTTGCCACCG GTTCCAAGCG CATCAGCGCC GGTTTCGGCA GGCCGAGCGA CGACGTGCCG GGTGGCCGCG GTGGCGACAA CCGCAAGGGC GGCCCGCGCG AACCCGATCC CTTGCAGACC TCGGTCGGCT ACATCGGCTC CGATGCCTAT TTCAACAAGC CGGGCGGTCC GAACCGCGGC CGTGGCGGTC GCCGCCGCTG A
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Protein sequence | MNDMPDTPDT TAATPSSDST AAPKRRRTRK SADDTVPALD SSAAQAAELP VETPVEQAPA AQAPAEKKRR AARASVEPVA AAAEAPAEGV AAPARKPRAP RRVDAPSADA SPVEVVAAPD AVAPAPVAEA SVQSDEGADA AVRPARRSRG RKTQGDAVAV AAADEASAAP SGDAPTGDRV EAAVEPGETS QSGAVVQAPE RDTRRRDRRQ KQREERPRAV EAEAAPAIFT LGEMPEGEAG AADAALALPV DAGQLFAAVL SGDYDVEDAE EEEVSADPGK RVLRPEPEAP KLHKVLAQAG VGSRRDMEQL IQEGQVSVNG EVAHIGMRIA QGDQIKIAGR PIKVRIAPPP ARVLAYHKPV GEVVTHHDPE GRPTVFRRLP RLPVGKWLSV GRLDINTEGL LLFTNSGELA NQLMHPRFGV EREYAVRVLG SLDEAARARL LEGVEIEGQR AMFKSIDDGG GEGINHWYRV VITEGRNREV RRLFDAVGLT VSRLIRIRYA TVVLPRGLKR GVWVELDDND VRQIRQIANG PRAERGEREE RGPRADRAER GPRDGQQPGR GAGKGKGGGQ GQGQGPQMSQ GGQNAPGGRG NQQRGNKPVG KGGQGGQGFE RRGPDGRPGA PRSGGAEWRD ERPARDGNVS REPPREREDG DFGDDPLHIP NPLEQTFDRR FATGSKRISA GFGRPSDDVP GGRGGDNRKG GPREPDPLQT SVGYIGSDAY FNKPGGPNRG RGGRRR
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