Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_2854 |
Symbol | |
ID | 6162606 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 3140983 |
End bp | 3142629 |
Gene Length | 1647 bp |
Protein Length | 548 aa |
Translation table | 11 |
GC content | 75% |
IMG OID | 641665632 |
Product | carbohydrate kinase, YjeF related protein |
Protein accession | YP_001791884 |
Protein GI | 171059535 |
COG category | [G] Carbohydrate transport and metabolism [S] Function unknown |
COG ID | [COG0062] Uncharacterized conserved protein [COG0063] Predicted sugar kinase |
TIGRFAM ID | [TIGR00196] yjeF C-terminal region, hydroxyethylthiazole kinase-related [TIGR00197] yjeF N-terminal region |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 0.212974 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGCCGC ACCCGTTCGA CGCCGCAAGC GCACCGCCCC GGTCGGTGCT GACCGGCCGC GACCGCTCGA ACCTGCTGCT GCACGATGCC CGCCACGGCA GCGAGCTCGA GCGTCTGCAC GCGCTGGCGC TGCCACCGCA CACGCTGATG CAACGCGCCG GCCAGGCGCT GGCACGGCTG GCCATCGCGC TGGCGCCGCA CAGTCGGCGG ATCGAGATCG TCGCCGGCCC CGGCAACAAC GGCGGCGACG GCTTCGAAGC CGCGGCCCTG TTGCAGCAGG CCGGCAAGAC GGTTCGGGTC TGGTGGCTTG GCCAGCCCGA TCGACAACCG GCCGATGCCG GCGCTGCGCG ACTGCGGGCA CTCGCCTTCG GCGTGCCGGT CGTGCCGATC GACGACACCG GCCAGACGCT GCTTCAGGAC ACCCTGAGCC GCTGCGATCA CGGCACGCTG GTGATCGACG CCCTGCTCGG TCGCGGCCTG AACCGCGCCG CCGACGGACG GATCGCCGAA CTGATCGCGA CCATCAATGC GAGCGCCGCA GCCGTGCTGG CGGTCGATCT GCCGTCCGGG CTGAACGGCG ACACCGGCAG CTGGCCACCG GCTCCGGCAG GCGGTGCGGC GGCGGTGATC GACGCCGACT GGACGCTCGC GCTGCTCAGC CCGGCGCCCG GACTGTTCAC CGGCTCCGGC CGCGATCACG CCGGCGAGAT CTGGTGGCAC GACCTGGCGG TCGACCTGCA GGCCGTGCCG GCGCAGGCCG TGCTCGAGCG TGGCGCCGCC TTCGATGCGG TGGCGGTGCC GCGGCGCCAC GCCCAGCACA AGGGCAGCTT CGGCGACGTG TGGGTGATCG GCGGCGCGGC ATCGATGGCG GGCGCCGCGT GGCTGGCCGC ACGCGCGGCG CTGCAGTGCG GCGCGGGGCG GGTCTATGTC GATCTGCTGG ACGCCCGCTC GCGCCACGCC GACACGCTGC ATCCCGAACT GATGCCGGGC GCCACGCCCG ACGCGGCGCG GCTGGGCGCA TCGACCGTGG TAGCCGGTTG CGGCGGCGGC ACCGACATCG CCGCACGCCT GCCGTCGCTG CTGGCGCACG CCGCCCGCCT GGTGCTCGAC GCCGATGCGC TCAATGCGAT CGCCGCCGAT CCGGCACTCG ATCGAGCGTT GCGGGCGCGT GGCACGTCGG GCCGGCCCAC CGTGATGACA CCGCACCCGC TGGAGGCCGC ACGGCTGCTC GGCTGCAGCG CCGCCGACGT GCAGCGCAAC CGGTTCGAGG CCGCGCAGAC CCTGGCCGAT CGCTGGCAGG TCGTGGTCGT GCTCAAGGGA TCGGGCTCGG TGATCGCCGC GCCAGGCGAG CTGCCGTCGA TCAACGGCAG CGGCAACGCC GCACTGGCCA CGCCCGGCAG CGGCGACGTG CTGGCCGGCT GCCTCGGCGG CCTGTGGAGC CGTCACGCCA GCACGCGCCG CGACGCAGCC TCGGGCCCGC ATGCGGACTC GCTGCAAACC GCAAGGCAGG CCACGCTGGC GGCCTGCCAC CTGCACGGCG CCACCGCCCA GGCGCTCAGC CCGCAGGCCG AAGCACTGCC CGCGGCACGC GTCGCCGAAG CGCTCGGCGA CGAGCTGCGA CGCATCGCCG CGGCACGCCG GGCCTGA
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Protein sequence | MTPHPFDAAS APPRSVLTGR DRSNLLLHDA RHGSELERLH ALALPPHTLM QRAGQALARL AIALAPHSRR IEIVAGPGNN GGDGFEAAAL LQQAGKTVRV WWLGQPDRQP ADAGAARLRA LAFGVPVVPI DDTGQTLLQD TLSRCDHGTL VIDALLGRGL NRAADGRIAE LIATINASAA AVLAVDLPSG LNGDTGSWPP APAGGAAAVI DADWTLALLS PAPGLFTGSG RDHAGEIWWH DLAVDLQAVP AQAVLERGAA FDAVAVPRRH AQHKGSFGDV WVIGGAASMA GAAWLAARAA LQCGAGRVYV DLLDARSRHA DTLHPELMPG ATPDAARLGA STVVAGCGGG TDIAARLPSL LAHAARLVLD ADALNAIAAD PALDRALRAR GTSGRPTVMT PHPLEAARLL GCSAADVQRN RFEAAQTLAD RWQVVVVLKG SGSVIAAPGE LPSINGSGNA ALATPGSGDV LAGCLGGLWS RHASTRRDAA SGPHADSLQT ARQATLAACH LHGATAQALS PQAEALPAAR VAEALGDELR RIAAARRA
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