| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2854 |
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| Symbol | |
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| ID | 6162606 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 3140983 |
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| End bp | 3142629 |
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| Gene Length | 1647 bp |
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| Protein Length | 548 aa |
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| Translation table | 11 |
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| GC content | 75% |
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| IMG OID | 641665632 |
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| Product | carbohydrate kinase, YjeF related protein |
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| Protein accession | YP_001791884 |
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| Protein GI | 171059535 |
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| COG category | [G] Carbohydrate transport and metabolism
[S] Function unknown |
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| COG ID | [COG0062] Uncharacterized conserved protein
[COG0063] Predicted sugar kinase |
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| TIGRFAM ID | [TIGR00196] yjeF C-terminal region, hydroxyethylthiazole kinase-related
[TIGR00197] yjeF N-terminal region |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 0.212974 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGCCGC ACCCGTTCGA CGCCGCAAGC GCACCGCCCC GGTCGGTGCT GACCGGCCGC
GACCGCTCGA ACCTGCTGCT GCACGATGCC CGCCACGGCA GCGAGCTCGA GCGTCTGCAC
GCGCTGGCGC TGCCACCGCA CACGCTGATG CAACGCGCCG GCCAGGCGCT GGCACGGCTG
GCCATCGCGC TGGCGCCGCA CAGTCGGCGG ATCGAGATCG TCGCCGGCCC CGGCAACAAC
GGCGGCGACG GCTTCGAAGC CGCGGCCCTG TTGCAGCAGG CCGGCAAGAC GGTTCGGGTC
TGGTGGCTTG GCCAGCCCGA TCGACAACCG GCCGATGCCG GCGCTGCGCG ACTGCGGGCA
CTCGCCTTCG GCGTGCCGGT CGTGCCGATC GACGACACCG GCCAGACGCT GCTTCAGGAC
ACCCTGAGCC GCTGCGATCA CGGCACGCTG GTGATCGACG CCCTGCTCGG TCGCGGCCTG
AACCGCGCCG CCGACGGACG GATCGCCGAA CTGATCGCGA CCATCAATGC GAGCGCCGCA
GCCGTGCTGG CGGTCGATCT GCCGTCCGGG CTGAACGGCG ACACCGGCAG CTGGCCACCG
GCTCCGGCAG GCGGTGCGGC GGCGGTGATC GACGCCGACT GGACGCTCGC GCTGCTCAGC
CCGGCGCCCG GACTGTTCAC CGGCTCCGGC CGCGATCACG CCGGCGAGAT CTGGTGGCAC
GACCTGGCGG TCGACCTGCA GGCCGTGCCG GCGCAGGCCG TGCTCGAGCG TGGCGCCGCC
TTCGATGCGG TGGCGGTGCC GCGGCGCCAC GCCCAGCACA AGGGCAGCTT CGGCGACGTG
TGGGTGATCG GCGGCGCGGC ATCGATGGCG GGCGCCGCGT GGCTGGCCGC ACGCGCGGCG
CTGCAGTGCG GCGCGGGGCG GGTCTATGTC GATCTGCTGG ACGCCCGCTC GCGCCACGCC
GACACGCTGC ATCCCGAACT GATGCCGGGC GCCACGCCCG ACGCGGCGCG GCTGGGCGCA
TCGACCGTGG TAGCCGGTTG CGGCGGCGGC ACCGACATCG CCGCACGCCT GCCGTCGCTG
CTGGCGCACG CCGCCCGCCT GGTGCTCGAC GCCGATGCGC TCAATGCGAT CGCCGCCGAT
CCGGCACTCG ATCGAGCGTT GCGGGCGCGT GGCACGTCGG GCCGGCCCAC CGTGATGACA
CCGCACCCGC TGGAGGCCGC ACGGCTGCTC GGCTGCAGCG CCGCCGACGT GCAGCGCAAC
CGGTTCGAGG CCGCGCAGAC CCTGGCCGAT CGCTGGCAGG TCGTGGTCGT GCTCAAGGGA
TCGGGCTCGG TGATCGCCGC GCCAGGCGAG CTGCCGTCGA TCAACGGCAG CGGCAACGCC
GCACTGGCCA CGCCCGGCAG CGGCGACGTG CTGGCCGGCT GCCTCGGCGG CCTGTGGAGC
CGTCACGCCA GCACGCGCCG CGACGCAGCC TCGGGCCCGC ATGCGGACTC GCTGCAAACC
GCAAGGCAGG CCACGCTGGC GGCCTGCCAC CTGCACGGCG CCACCGCCCA GGCGCTCAGC
CCGCAGGCCG AAGCACTGCC CGCGGCACGC GTCGCCGAAG CGCTCGGCGA CGAGCTGCGA
CGCATCGCCG CGGCACGCCG GGCCTGA
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| Protein sequence | MTPHPFDAAS APPRSVLTGR DRSNLLLHDA RHGSELERLH ALALPPHTLM QRAGQALARL
AIALAPHSRR IEIVAGPGNN GGDGFEAAAL LQQAGKTVRV WWLGQPDRQP ADAGAARLRA
LAFGVPVVPI DDTGQTLLQD TLSRCDHGTL VIDALLGRGL NRAADGRIAE LIATINASAA
AVLAVDLPSG LNGDTGSWPP APAGGAAAVI DADWTLALLS PAPGLFTGSG RDHAGEIWWH
DLAVDLQAVP AQAVLERGAA FDAVAVPRRH AQHKGSFGDV WVIGGAASMA GAAWLAARAA
LQCGAGRVYV DLLDARSRHA DTLHPELMPG ATPDAARLGA STVVAGCGGG TDIAARLPSL
LAHAARLVLD ADALNAIAAD PALDRALRAR GTSGRPTVMT PHPLEAARLL GCSAADVQRN
RFEAAQTLAD RWQVVVVLKG SGSVIAAPGE LPSINGSGNA ALATPGSGDV LAGCLGGLWS
RHASTRRDAA SGPHADSLQT ARQATLAACH LHGATAQALS PQAEALPAAR VAEALGDELR
RIAAARRA
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