| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2843 |
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| Symbol | |
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| ID | 6162660 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 3130124 |
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| End bp | 3131599 |
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| Gene Length | 1476 bp |
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| Protein Length | 491 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641665621 |
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| Product | membrane-associated zinc metalloprotease |
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| Protein accession | YP_001791873 |
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| Protein GI | 171059524 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0750] Predicted membrane-associated Zn-dependent proteases 1 |
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| TIGRFAM ID | [TIGR00054] RIP metalloprotease RseP |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAGTC TGCTGTTTTT CCTGATCACG CTGGCGGTGC TGATCGTGGC CCACGAGTGG
GGCCATTACC GGGTCGCTCG GGCCTGCGGC GTGAAGGTGC TGCGCTTCTC GATCGGCTTT
GGCCGCCCGC TGTGGCGGCG CCAGTCCGGC GATACCGAGT GGGTGATCGG CATGCTGCCG
CTGGGCGGCT ACGTGAAGAT GCTCGACGAG CGCGAGGCGC CCGTGCCGCC GGACCAGCTC
GATCAGTCGT TCAACCGCAA GGCCTTGTGG CAGCGCACCG CCATCGTCGC CGCCGGCCCG
CTGGCCAATC TGATCCTCGC CGTGATGCTC TACGCCGCGG CAAGCTGGAT CGGCACCGAC
GAACCACGTG CCTTGCTGAG CACGCCGATC GCCGGCAGCC AGGCCGAGCG TGCCGGTGTG
CGTGCCGGCG ACCACGTGCT GCGCATGGCG GTCGGGCCTG ACGCCGACTG GGACGAGGTG
CTGTCGCTGA CCGACCTGCG GTGGCAGCTC ACCCGTGCTG CCCTCAACGG CCAGGATGTT
CGCCTCGAGC TGCGGCGTTC GGGCGGCACC GGGATCGATT CGGTGAGCCT GCCGCTGTCC
GAACTCGATG CCACCGATGC CGATCCCGGC CTGATGCGCC GCATCGGCCT GGGCGCGCCC
TTTGCCGAGC CGGTGCTCGG CGAAGTCGTG GCTGGCGGAG CGGCAGCGCG CGCAGGACTG
CGACCGGGCG ACCGGGTGCT GAGCGTCGAC GGCAAGTCGG TCAACGATGC GGCGGCGCTG
CGCGCCACGA TCCGGGCTGC GGCGCTCGAG GCGCAGAAGC CCGCCGAGGA GGTCACGTCA
CCCGTCCCGA CACCGTCGGC GCCGGACTCG TCCCTGGCGC AGGAGCTGTC GGCGCCGGAT
CTGCCGGTCG AAGCGGTGGC TCTGCCCCCC GGCAGCCAGC GCTGGCGCAT CGAGCGTGCG
GGGCAGGCGA TGGAGGTCGT CGTGACGCCG GCGATCGTCG ATGACCGCGG CCAGCGCATC
GGCCGCATCG AGGCGGTGGT GGGCGCGCGC GTGCAGATGG ACCCTGTGCA GCACGGCCTG
GTCGACGGCC TGCTGCGTGG CCTCGATCGC ACCGTCGAGA TGGGGGCCCT GACGCTCAAG
ATGTTCGGCC GCATGCTGAC CGGTGACGCC TCGGTGCGCA ACCTCAGCGG CCCGCTCACG
ATCGCCGAAT TTGCCGGTCA GTCGGCCGAG CTCGGCATCG CCTATTACCT CGGTTTTCTG
GCGGTCGTCA GCGTCAGCCT GGGCATGCTG AACCTGCTGC CGCTGCCGAT GCTCGACGGC
GGACACCTCT TGTATTATCT GTTCGAGGGG GTGGTCGGGC GCCCGATCCC GGATGTCTGG
ATCGAGCGGC TGCAGCGAGG TGGGCTGGTG GTCATCCTCA TGATGATGTC GCTCGCCCTC
TACAACGACG TGGCCCGCCT GATGGGCCTG CACTGA
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| Protein sequence | MNSLLFFLIT LAVLIVAHEW GHYRVARACG VKVLRFSIGF GRPLWRRQSG DTEWVIGMLP
LGGYVKMLDE REAPVPPDQL DQSFNRKALW QRTAIVAAGP LANLILAVML YAAASWIGTD
EPRALLSTPI AGSQAERAGV RAGDHVLRMA VGPDADWDEV LSLTDLRWQL TRAALNGQDV
RLELRRSGGT GIDSVSLPLS ELDATDADPG LMRRIGLGAP FAEPVLGEVV AGGAAARAGL
RPGDRVLSVD GKSVNDAAAL RATIRAAALE AQKPAEEVTS PVPTPSAPDS SLAQELSAPD
LPVEAVALPP GSQRWRIERA GQAMEVVVTP AIVDDRGQRI GRIEAVVGAR VQMDPVQHGL
VDGLLRGLDR TVEMGALTLK MFGRMLTGDA SVRNLSGPLT IAEFAGQSAE LGIAYYLGFL
AVVSVSLGML NLLPLPMLDG GHLLYYLFEG VVGRPIPDVW IERLQRGGLV VILMMMSLAL
YNDVARLMGL H
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