| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2835 |
|---|
| Symbol | |
|---|
| ID | 6163103 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 3122296 |
|---|
| End bp | 3123129 |
|---|
| Gene Length | 834 bp |
|---|
| Protein Length | 277 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641665613 |
|---|
| Product | tRNA/rRNA methyltransferase (SpoU) |
|---|
| Protein accession | YP_001791865 |
|---|
| Protein GI | 171059516 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0566] rRNA methylases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 57 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACACAAC CTTCCGATCT CACGCCCACA CCCGTTTCGG CGATCGCCGC CGCCCACAAG
GTGCGCGAGG TCAGCTCGCA CAGCCATGCG CTGGTCAAGG ACCTGCGCCG GCTGGCGCAC
GAGGCCGGCG CCTACCGCAA GCTCGGCCGC ATCTGGCTCG AGGGCGATCA CCTCGCCCGC
GCCTTGCTGG CGCGAGGTGG ACGGCCACAG ATCTGCGTGG TCGGCGCCAG TGCCTGGCTG
CAGCCGAACT GGCGCGAACT GGCGCTGGCC GCACCCGAGG TGGTGGTGAT CGCCGACAAC
CTGTTGCCCG AGATCAGCTC GCTCGAATCA CCCGCGCCAT TGGGTTTCCT GATCGCCGCG
CCGGCCGCGC GGGTGCCGAC GCAGTCGGGC GTGAACACGC TGGTGCTCGA CCGCCTGCAG
GACCCCGGCA ACGTCGGCAC GCTGCTGCGC AGCGCGGCGG CGCTGGGTGT CAAGCAGGTG
CTGGCGATGA AGGGCACCGC CGCGCTCTGG TCGCCCAAGG TGCTGCGCGC GGGCATGGGC
GCGCATTTCG CGCTGCATCT GGTGGAAGGG GTCGAGGTCA ACGAGCTCGA CACGCTCGAT
CTGCCGCTGC TGGCCACCAG TTCGCATGCC GAGCAGTCCC TGCACGAGGT GCGGCTGCCG
CAGCCCTGCG CCTGGGTGCT GGGCCACGAA GGCCAGGGCG TGGCCGAGGC GGTGATGCGC
CGCTGCGCGC TGACGGTGCG CATCCCGCAG CCGGGCGGCG AGGAGTCGCT CAACGTGGCG
GCGGCCGCGG CGATCTGTCT CTACGAATCG GCCCGGCAGG CGCTCACGGG CTGA
|
|---|
| Protein sequence | MTQPSDLTPT PVSAIAAAHK VREVSSHSHA LVKDLRRLAH EAGAYRKLGR IWLEGDHLAR
ALLARGGRPQ ICVVGASAWL QPNWRELALA APEVVVIADN LLPEISSLES PAPLGFLIAA
PAARVPTQSG VNTLVLDRLQ DPGNVGTLLR SAAALGVKQV LAMKGTAALW SPKVLRAGMG
AHFALHLVEG VEVNELDTLD LPLLATSSHA EQSLHEVRLP QPCAWVLGHE GQGVAEAVMR
RCALTVRIPQ PGGEESLNVA AAAAICLYES ARQALTG
|
|---|
| |