| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2750 |
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| Symbol | |
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| ID | 6163989 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 3027406 |
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| End bp | 3030315 |
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| Gene Length | 2910 bp |
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| Protein Length | 969 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641665527 |
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| Product | formate dehydrogenase, alpha subunit |
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| Protein accession | YP_001791780 |
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| Protein GI | 171059431 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3383] Uncharacterized anaerobic dehydrogenase |
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| TIGRFAM ID | [TIGR01591] formate dehydrogenase, alpha subunit, archaeal-type |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.0453604 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACTACC CCGTCTTCAA GATCCACGAG ATCGACTACG GCACGCCGCC CAGCTACAGC
GACAAGGAAG TGACGCTGGA GATCGACGGC AATCAGGTCA CCGTGGCGGC CGGCACCTCG
CTGATGCGCG CCGCGGTGGA TGCCGGCATC GCCGTGCCCA AGCTCTGCGC CACCGACAGC
CTGGAGCCCT TCGGCTCGTG CCGGCTGTGC CTGGTCGAGA TCGAGGGCCG CAAGGGTTTT
CCGGCCTCGT GCACCACGCC GGCTGAAGCC GGCATGAAGG TGCGCACGCA GACGCCGAAG
CTGCAGGAGC TGCGCAAAGG CGTGATGGAG CTTTACATCA GCGACCACCC GCTCGACTGC
CTGACCTGCG CCGCCAACGG CGACTGCGAA CTGCAGGACA TGGCCGGCGT GGTCGGCCTG
CGCAACGTGA GGTATGGCGT CGGCGAAACC AGCGTGGCCG GCATCACCGG GCGCCACCAC
CTGGCCGCGG CCAAGGACGA GTCGAACCCG TATTTCACCT ACGACCCGAG CAAGTGCATC
GTCTGCAACC GCTGCGTGCG CGCCTGCGAA GAAACGCAGG GCACCTTCGC GCTGACGATC
TCGGGCCGCG GTTTCGAGTC GCGCGTATCG GCCGGCATGG ACGAGCCGTT CATGCAGAGC
GAGTGCGTGA GTTGCGGCGC CTGCGTGCAG GCCTGCCCGA CCGCCACGCT GACCGAAAAG
AGCGTGATCG AGCTCGGCCA GCCCGAACAC AGCGTCATCA CCACCTGCGC CTATTGCGGC
GTGGGCTGCG CCTTCAAGGC CGAGATGAAG GGCAACCAGG TCGTGCGCAT GACGCCCTGG
AAGGACGGAA AGGCCAACGA GGGCCACAGC TGCATCAAGG GCCGCTTCGC CTGGGGTTAC
GCGACGCACA AGGACCGCAT CACCCGCCCG ATGATCCGCG CCAGCATCAC CGATCCGTGG
CAGGAGGTGA GCTGGGAGGT GGCGGTCGGC CACGCGGCGA GCGAGTTCAA GCGCATCCAG
GCCCAGCACG GGCGCGATTC GGTCGGCGGC ATCACGTCGA GCCGCTGCAC GAATGAAGAG
GCCTATCTGG TGCAGAAGCT GGTGCGCACC GCCTTCGGCA ACAACAACGT CGACACCTGC
GCGCGGGTCT GTCACAGCCC GACCGGCTAC GGCCTGGGCC AGACCTACGG CACGTCGGCG
GGCACGCAGA CCTTCAAGTC GGTCGATCAG GCCGACGTGA TCCTGGTGAT CGGCGCCAAT
CCGAACGAGG CGCATCCGGT GTTCGGCTCG CGCATGAAGA AGCGGCTGCG CCAGGGCGCC
CGGCTGATCG TGATCGACCC GCGCGCGATC GACCTGGTGA ACTCGGCGCA CGTCAAGGCC
GACTACCACC TGCAGCTGCG GCCCGGCACC AACGTGGCGG TGATCAGCGC GCTGGCGCAT
GTGGTCGTCA CCGAAGGGCT GGTCGACGAG GCCTATGTGG CCGAGCGGTG TGATCCGAAG
AGTTTTGCGC AGTGGCGCGA TTTCGTCGCC CAGCCACAGA ACTCGCCCGA GGCGATGGAA
GCGGTCAGCG GCGTGCCGGC CGAACTGCTG CGCGGCGCGG CGCGGCTGTA CGCCAGCAAG
GGCAAGAACG CCGCCATCTA CTACGGCCTG GGCGTGACCG AACACGCGCA GGGCTCGACC
ATGGTGATGG GCATCGCCAA CCTCGCGATG GCCACCGGCA ACGTCGGCCG CGAGGGTGTG
GGCGTGAACC CGCTGCGTGG CCAGAACAAC GTGCAGGGCA GCTGCGACAT GGGCAGCTTC
CCGCACGAGC TGCCGGGCTA CCGGCACATC TCCGACGCCA CGGTGCGTGG CGAGTTCGAG
GCCGCCTGGG GCGTGGCGCT GCAGGCCGAG CCGGGGCTGC GCATCCCCAA CATGTTCGAC
GCCGCGCTCG AAGGCAGCTT CAAGGGCCTG TATTGCGTCG GCGAGGACAT CGTGCAGTCG
GACCCCAACA CCCAGCACGT GGCGGCGGCG CTGTCGGCGA TGGAATGCAT CGTCGTGCAG
GACATCTTCC TCAACGAGAC CGCCAAGTAC GCGCACGTGT TTTTGCCGGG CGCGTCGTTC
CTGGAGAAGG ACGGTACCTT CACCAACGCC GAACGCCGCA TCAGCCGCGT GCGCCAGGTG
ATGCCGCCGC TGGCCGGCAA CGGCGACTGG GAGGCGACGC AACTGCTCGC CAACGCGCTC
GGTTATCCGA TGGCCTACAC GCATCCCGAG CGGATCATGG CGGAGATCGC CGCGTTGACA
CCGAGCTTTG CCGGCGTCAG CTACGAGAAG ATCGAGCGCC TGGGCAGCGT GCAGTGGCCA
TGCAACGAGC ACACGCCCGA GGCCGGCACG GACATCATGC ACGTGGGTGG TTTCGTGCGT
GGCAAGGGCC GTTTCATGCT CACGCAGTAC GTGGCGACGG ACGAGAAGGT GACACGCAAG
TTCCCGCTCA TCCTCACCAC CGGCCGGGTG CTGAGCCAGT ACAACGTCGG CGCGCAGACG
CGGCGCACCG ACAACAGCCG CTGGTACGAG GAAGACAGGC TGGAGATCCA TCCGCACGAC
GCCGAGGAGC GGGGCATCCG CCAGGACGAC TGGGTCGGCA TCGCCAGCCG AGCCGGCCAG
ACGGTGCTGC GCGCCGAGGT GTCCGAGCGG GTGCAGCCGG GCGTGGTCTA CGCGACCTTC
CACTTCCCCG AGTCGGGCGC CAACGTCATC ACCACCGACA GCTCCGACTG GGCCACCAAC
TGCCCCGAGT ACAAGGTGAC GGCGGTGCAG GTCAGCAAGG TCAGCCAGCT CAGCGACTGG
CAGCAGCAGT ACAACCGTTT CAACCACACC CAGCAGGCGC TGCTGGCCCA GGCCGGCGGC
CCGTTGACAT CCGAAGAGGC CACACGATGA
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| Protein sequence | MNYPVFKIHE IDYGTPPSYS DKEVTLEIDG NQVTVAAGTS LMRAAVDAGI AVPKLCATDS
LEPFGSCRLC LVEIEGRKGF PASCTTPAEA GMKVRTQTPK LQELRKGVME LYISDHPLDC
LTCAANGDCE LQDMAGVVGL RNVRYGVGET SVAGITGRHH LAAAKDESNP YFTYDPSKCI
VCNRCVRACE ETQGTFALTI SGRGFESRVS AGMDEPFMQS ECVSCGACVQ ACPTATLTEK
SVIELGQPEH SVITTCAYCG VGCAFKAEMK GNQVVRMTPW KDGKANEGHS CIKGRFAWGY
ATHKDRITRP MIRASITDPW QEVSWEVAVG HAASEFKRIQ AQHGRDSVGG ITSSRCTNEE
AYLVQKLVRT AFGNNNVDTC ARVCHSPTGY GLGQTYGTSA GTQTFKSVDQ ADVILVIGAN
PNEAHPVFGS RMKKRLRQGA RLIVIDPRAI DLVNSAHVKA DYHLQLRPGT NVAVISALAH
VVVTEGLVDE AYVAERCDPK SFAQWRDFVA QPQNSPEAME AVSGVPAELL RGAARLYASK
GKNAAIYYGL GVTEHAQGST MVMGIANLAM ATGNVGREGV GVNPLRGQNN VQGSCDMGSF
PHELPGYRHI SDATVRGEFE AAWGVALQAE PGLRIPNMFD AALEGSFKGL YCVGEDIVQS
DPNTQHVAAA LSAMECIVVQ DIFLNETAKY AHVFLPGASF LEKDGTFTNA ERRISRVRQV
MPPLAGNGDW EATQLLANAL GYPMAYTHPE RIMAEIAALT PSFAGVSYEK IERLGSVQWP
CNEHTPEAGT DIMHVGGFVR GKGRFMLTQY VATDEKVTRK FPLILTTGRV LSQYNVGAQT
RRTDNSRWYE EDRLEIHPHD AEERGIRQDD WVGIASRAGQ TVLRAEVSER VQPGVVYATF
HFPESGANVI TTDSSDWATN CPEYKVTAVQ VSKVSQLSDW QQQYNRFNHT QQALLAQAGG
PLTSEEATR
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