Gene Lcho_2728 details

Gene Information

• Locus tag: Lcho_2728
• ID: 6163466
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: -
• Start bp: 3010741
• End bp: 3011442
• Gene Length: 702 bp
• Protein Length: 233 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 641665505
• Product: flagellar L-ring protein
• Protein accession: YP_001791758
• Protein GI: 171059409
• COG category: [N] Cell motility
• COG ID: [COG2063] Flagellar basal body L-ring protein

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 14
• Fosmid unclonability p-value: 0.00000599963
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGAACCGCC TCGTCACGCG CATCGGCCGC AGTGCCCGGC TGGCCCTGCT GGTCGGCTCG 
GCCGCTTTGC TCGGCGCCTG CAACCTGATG CCCACCGTGG CCAAGGTGGA CGTGGCCGAG 
CCGACGTCGG CCCGACCGGT GGCGGTCGTC ACGCCCGGTG TCAGCAACGG CTCGATCTTC 
CAGGCCGGCG CCTACCGGCC GCTGTTCGAG GATCACCGCG CCCGCCTGGT CGGCGACACG 
CTGACGGTGC AGATCGTCGA GAAGGTCAGC GCCAGCGCCA AGTCGACCAG CACGGTCGAG 
AAGAGCGGCT CGGTCGATGC CTCGCTCACC GCCTTGCCCT ACCAGGGCGT GGCGGCGCTG 
GGCAAGCTGG GGGTGGGCGG ATCGAGCACC AACAAGTTCG CCGGCAAGGG CGGCACCGAG 
AACTCCAACG AGTTCAGCGG CACCATCACC ACCACCGTGA TCGAGGTGCT GCCCAACGGC 
CACCTGCTGA TCGCGGGTGA AAAGCAGATC GGCGTCAACG ACAACGCCGA CGTGCTGCGC 
TTCTCGGGCC AGGTCGATCC GCGCTCGATC CAGCCGGGCA ATTCGGTCGC CTCGGCGCAG 
ATCGCCAACG TGCGCGTCGA GCAGCGCGGC CGCGGCGGCG GCGCCGATGC GCAGAAGATA 
GGGTGGTTGG GGCGCTTCTT TTTGAACCTT CTGCCGATCT GA 

 

Protein sequence

MNRLVTRIGR SARLALLVGS AALLGACNLM PTVAKVDVAE PTSARPVAVV TPGVSNGSIF 
QAGAYRPLFE DHRARLVGDT LTVQIVEKVS ASAKSTSTVE KSGSVDASLT ALPYQGVAAL 
GKLGVGGSST NKFAGKGGTE NSNEFSGTIT TTVIEVLPNG HLLIAGEKQI GVNDNADVLR 
FSGQVDPRSI QPGNSVASAQ IANVRVEQRG RGGGADAQKI GWLGRFFLNL LPI