| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2614 |
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| Symbol | |
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| ID | 6162774 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 2865511 |
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| End bp | 2867253 |
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| Gene Length | 1743 bp |
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| Protein Length | 580 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641665390 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_001791644 |
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| Protein GI | 171059295 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 0.574914 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAACCC AACGAGATCC GGCCGACAGC GAGCCCGCCT ACGCGATCGA GGACTCCGGC
TCCGAGCTGA TGCAGGAGCA GGTCAACACG GTCCAGCAGC GCCTGCTCGA ACGCTTCGAG
GCCGAATCGC AGATCAGCTC GCAAGCCCAT GCGCCGGTGC GCGAGGCGGC CTTCCGGCGC
TGGCTCGGCG AGGCCAGCGG CATGCTGCTG GGCGACCTGC GCCAGGCGCG CACCGAGCTG
GCCGACTTCG GCCTGATCCC GTTCGCACAG GGCCAGCGGC GCCTGTGCGT GGCCCTGCGC
CGTGCCGACC ACGCCATCGA CCTGGTGCTG GCCGACCCGT TCGACCGCGG CATCCGGCTG
TGGATCGAAT CGCGCCTGCG TGAAGCCGGC CACCCGCGCA CCCGCTGGTA CGTCGCCACC
ACCGGCGACG TGCAGGCCTT CTACGCCCGG CTCGAACGCG AGACCCGCGC GCTGCAGGCC
GAAACCGGCG GCATCAGCGA CAGCGCCGGC AGCGACAGCG GCACGCTCGA ACTCTCGCTG
GCGCAGATCA GTGCCGACGA GAGCCCGGTG GTGCGCTTCC TCAACGGCAC GCTCTACGAC
GCGCTGCAGG CGCAGGCCAG CGACATCCAC CTCGAGTGCG GCCCGCGCGG CCTGGTCGTC
AAGTACCGGC TCGACGGCGT GCTGCAGAGC GTCAGCCGCC CCGAGGGCAA GGAGTTCGCC
GATCGCGTGA TCTCGCGCCT GAAGGTGCTG GCCGACCTCG ACATCTCCGA GCGCCGCGTG
CCGCAGGACG GCCGGCTCAA GCTCAGCCGC GCCGGCCGCG AGATCGACGT GCGGGTCTCG
ATCATGCCCA GCAGCTACGG CGAGGACGCG GTGCTGCGGA TCCTCGACCG CTACCAGCTG
GCGGCCGACC AGACCCTGTC GGTCGACCAC CTCGGCTTCG ACGCCCACGC CGCCGCCTTC
ATCCGCCGGC TGGCGCAGAT GCCCTACGGC CTGCTGCTCG TCACCGGCCC GACCGGCTCG
GGCAAGACCA CCACGCTGTA CGGCGTGCTG TCGGAGATCC ACACCGGCCA GGACAAGATG
ATCACCATCG AGGATCCGGT CGAGTACCAG CTGCCCGACG TGCTGCAGAT CCCGGTCAAC
GAGGCCAAGG GGCTGACGTT TGCACGCGGC CTGCGCTCGA TCCTGCGCCA CGACCCGGAC
CGCATCATGG TGGGCGAAAT GCGCGACGCC GAGACCGCCC AGATCGCCGT GCAGGCGGCG
CTGACCGGCC ACCAGGTCTA TGCGACGGTG CACGCCAACA ACGTCTTCGA CGTCATCGGC
CGGCTCGCCA GCATGGGCGT CGACCCCTAC AACCTGGTCG CGGCGCTCAA CGGCGTGGTG
GCGCAGCGGC TGGTGCGGGT GATCTGCCCG CATTGCACCG AGCCGGAACG CCCGGCCGTC
GACCTGCTGG TCGCCAGCGG CCTGAGCCCC GACGTGCTCG ACCAGGGCTG GCGCTTCCAG
CATGGCCGCG GCTGCAGCCA TTGCCGCGGC ACCGGCTACA AGGGCCGGCG CGCGATCGCC
CAGACCATGG CGCTGGACAT CGAACTCAAA AGCCTGATCG CCGAACGCGC CAGCCCGGCG
CAGCTGCGCC GGGCCGCCGA AGAGCGCGGC CTCACCACCC TGCGCCACGC GGCGCTGGAG
CTGGTGCGCG CCGGCACCAC CACCCTGGAG GAAGCCAATC GTGTCACTGC GGTTCAAGAG
TGA
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| Protein sequence | METQRDPADS EPAYAIEDSG SELMQEQVNT VQQRLLERFE AESQISSQAH APVREAAFRR
WLGEASGMLL GDLRQARTEL ADFGLIPFAQ GQRRLCVALR RADHAIDLVL ADPFDRGIRL
WIESRLREAG HPRTRWYVAT TGDVQAFYAR LERETRALQA ETGGISDSAG SDSGTLELSL
AQISADESPV VRFLNGTLYD ALQAQASDIH LECGPRGLVV KYRLDGVLQS VSRPEGKEFA
DRVISRLKVL ADLDISERRV PQDGRLKLSR AGREIDVRVS IMPSSYGEDA VLRILDRYQL
AADQTLSVDH LGFDAHAAAF IRRLAQMPYG LLLVTGPTGS GKTTTLYGVL SEIHTGQDKM
ITIEDPVEYQ LPDVLQIPVN EAKGLTFARG LRSILRHDPD RIMVGEMRDA ETAQIAVQAA
LTGHQVYATV HANNVFDVIG RLASMGVDPY NLVAALNGVV AQRLVRVICP HCTEPERPAV
DLLVASGLSP DVLDQGWRFQ HGRGCSHCRG TGYKGRRAIA QTMALDIELK SLIAERASPA
QLRRAAEERG LTTLRHAALE LVRAGTTTLE EANRVTAVQE
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