Gene Lcho_2590 details

Gene Information

• Locus tag: Lcho_2590
• ID: 6163076
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 2829378
• End bp: 2835257
• Gene Length: 5880 bp
• Protein Length: 1959 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 641665365
• Product: multi-sensor hybrid histidine kinase
• Protein accession: YP_001791620
• Protein GI: 171059271
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG0642] Signal transduction histidine kinase
• TIGRFAM ID: [TIGR00229] PAS domain S-box

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 22
• Fosmid unclonability p-value: 0.0694001
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

GTGTCCACCG CCGCCACCCA GCGCAGCCGC CGAATCAGCT GGACGCTGCT TTACGCGGCT 
GTTGCCGCGC TGTGGATCTA CGGCTCCGAC GCGCTGCTGA GCGCGCTGGT GAGCGACCCC 
ATGGCGCTGT CGCAGCTGTC GGTGCTCAAG GGCTGGCTGT TCGTGGCGGT CACGTCGGTG 
GCGCTGTACT GGATCCTGGG CAAGTCCGGC CCGGCGACCC CCGCCCCGAT CGCGGCATCG 
ACCCGGGTCT GGCCCTTGCG CGTGATGGTG GTGGCCGGCG CCCTGACGAT CCTGGGCCTG 
ATCGGCCTGA CCATCACGCT GAGCTACGAG CAGCAGAAGC AGCGCGAAGG CGCCCGCATC 
GAGGCGATCG CCCAGCTGCG TGCCGACCAG ATCAGCGCCC TGCTGCAGGA CAAGAAGAAG 
GACAGCGCCT TCGTCGTCAA CAGCGCCTTC TTCGCCGACC TCCACACGCG CTGGAAGGAC 
GGCGGCGATG CCGCGGCCGG CGTGCTGCTG AAGAGGCGCC TGGGCGAGTA CCGCGAGTCC 
AACGGCTTCC AGTCGGTGCT GCTGCTCAAC GATCAATTCG AACCGCTGAT CACCTCCGGC 
GTCCACGCCG ACACCACCAG CGCGGCGCTG CAGCAGACCG TGCAACGCGC CTTCGCGACC 
GGCTTGCTGC AGGTTTCCGA CATCCACGGC GCCAGCAGCC CCGCCGACGC GCAGGTGCTC 
GATCTGGTCG CGCCGCTGCG CCTGAGCGGC CATCCGCCAC GTGTCGTGGT GGTGCTGCGG 
CTGCGCCTGA GCGATTTCCT GTACCCGACC CTCGACCACT GGCCGATCCC CAGCCGCAGC 
GCCGCCACGC TGCTGGTGCG GCGGGTCGGC GACGAGCTGA TCGGCGTGCG CGGTCGCAAT 
CCGATCCCGC TGGCCACCTC CGACTCGCTG GCCGCACGCG TGGTACGGGG TGAACTGCCG 
TACGGCCGAG CCGTCGAGGC GCCGGATTTC CGCGACAAGC CGGTGTTCGG GGCCGTCATG 
CCGATCAAGG GCACCGACTG GCTGCTGGTG GCGCGCATCG ACCGCGCCGA GCTGATCGAA 
CTGGCGATGA AGGACGCCAT GTGGATCGGC GCGGCCGGGC TGCTGGCGCT GTTCATGGGC 
GGCGTGGCGG CGTACTGGCT GCGCGAGCGC CAGTCGCTGC AGTTCGAGCT GCGCGCGCAG 
TCGCAGGAAC ACGAACGCCT GCGCGCCCTC GCCTTGCTGT CGGCCATCGC CGACAGCTCG 
ACCGACGCGA TCTTTGCCAA GGACCTGCAG GGCCGCTACC TGCTGTTCAA CCGCGAAGCC 
TCGCGCCTGA CAGGCATGTC GGCCGATGCG GTGCTGGGCA ATGACGACCA CCTGCTGTTC 
CCGCCCGAGC AGGCGGCGAA AGTGATGGCC AACGACGCCC AGGTGATGCG CGACGGCCAG 
GTCGGGACTT TCGAGGAGGA GCTCGACACC CCCGAAGGCC GGGCGACCTA CATGGCCACC 
AAGGGGCCGC TGCGTGACAC GCAGGGGCAG GTGGTCGGCA TGTTCGGCAT CTCGCGCGAC 
GTCACCGAGA AGCGGCGTGC CGAACAAGCG CTCGCACGCA GCGAGGCGCG CTACCGCGCC 
GCCTTCGAGC AGGCGGCGGT CGGCATGTCC GAAACCGGTC TCGACGGCCG CTGGCTGCAC 
GTCAACGACC GGCTTTGCGA GATCACCGGC TACAGCCGCG ACGAGCTGCT GCAGATGCGT 
TTCCAGCAGG TCACGCTGCC CGAGGAACTC GAGCCGATGC AGGTGCTGAT CGAGCGCACG 
CTGGCGGGCG AGCAGAACGG CTTCTCGATC GAGAAGCGCG ATCGCCACCG CGACGGCTGG 
CTGATCTGGG TGCACGTGTG GACGCAGCTG GTGCGCGACG AACACGGCGC GCCGCAGTAC 
TTCGTGTCGG TGATCGAGGA CATCAGCCTG CGCAAGCAGA CCGAGGCGGC GCTGGCCGAA 
TCGGTCGAAC TGGTGCAGGC GGTGGAAGAC TCGGTGCTCG ATCACATGGC GGTGCTCGAT 
GCCGACGGCA ACATCGTCGC GGTCAATGCG GCCTGGGAGC GCTTTGCGCA CGACAACACC 
GATCCCGGCA ACGAAGGCAG CGAACGCAGC GACGGCAGGC CGGCGCCGCG CACCGGCGTG 
GGCGACAACT ACCTGCGCGT CTGCGAGGCC GCCACCGGTG ACGAGGCCGC GCAGGCCCGC 
GCCATCCACG ACGGCATCCG GGCGGTGCTG CGGGGCGAGG CCCAAGCGTA TGCGGTCGAC 
TACACCTGCC ACACGCCCAC GCGCAAACGC TGGTTCCATC TGGCCGTGAC GCCCCTGCGC 
ACGCGCAGCA GCGGCGCGGT GATGGTGCAC ACCGACATCA CCGATCGCAA GCGCGAGCAG 
GAGCTGCTGC GCAAGAGCGA AGCACGCCAT CGCTCGATGG TGAATTCGCT CAGCGAAGGC 
ATCATCATCT TCGACGCCCG CGGCCATGTC CAAGCCTGCA ACCCCGCCGC CGAACGCATG 
ATGGGCCTGA CGCAGGCACA GATGCGCGGC CCGCGCGAGA CCGGCCTGGC GATGTGGCGC 
CCGGTGCAGC CCAACGGCAG GCCGATGCCC CGCTCGAAGC TGCCGCTGCT GCGCACGCTG 
ACGACCGGCC AGCCCTGCCA CGACGTGGTG CTCGGCGGCG TCACGCCCGA CGGCAAGACG 
CGCTGGCTGC TGGCCAACGC CGAGCCGGTG CGCGAGCCGG TGTCGGGCGA GCTGACCGGC 
GTGGTCACGT CGTTCACCGA CATCAGCGAG CGTTTCGTCG CCGAGCAGCA GCTGCGCAAG 
CTGTCGCTGG CGGTCGAACA GAGCCCCACC GGCATCGTCA TCACCGACGT GCAGGGCAAC 
ATCGAATACG TCAACCAGGC CTACACGCTG GTCAGCGGCT ACAGCCGCGA CGAGCTGATG 
GGACACAACC CGAGCCTGGC GCAGTCGGGC CTGACACCGC GCCAGCATTA CACCGACATG 
TGGAGCACGC TGGCAAAGGG CCAGTCGTGG CAGGGCGAGT TCATCAACCG GCGCAAGAGC 
GGCGAGACCT ACGACGTGTT CGCCACCGTG GTGCCGATGC GTGACGGTGA AGGCGCGGTC 
ACGCATTACC TGGCGATCAG CGAGGACATC ACCGAACGCA AGCGCCTGAG CGCCGAGCTC 
GACCAGCATC GACACCACCT CGAGGAGTTG GTGGCCGAGC GCACCCAAGC GCTTCAGGTC 
GCGCACCAGG CGCTGGCCGA CAGCGAGAAA TTCCTGCGCT CGCTGGCCGA CAACCTGCCC 
GACCGGCTCA CCTACTGGGA CACCGACCTG CGCTGCCGGT TCGCCAACAA GGCCTTCCTG 
AAGTTCCACG ACCTGAGCGA GGAGCAGGCC ATCGGCCGCA GTTCCAGGCA TCTGCTGATG 
GATCAGGCCA GTGCCAGCGA ATGGATCGTG CGCATGTCGG CGGCGATGAG CGGAGCCCCG 
CAACACTTCG AACGGGCCCG GTTGGGTGCC GATGGCCGCA GTCGCACAGA AAGGGTGCAC 
CAGATCCCCG ACCTCAAGGA CGGCGTCGTC CAGGGTGCGT TCGTGCTGGT GTCGGACATC 
ACCGGCATCA AGCAGGCCGA ACAGCGCCTG ACCCAGCTCA ACGAGGAACT GACCTTCGCA 
CGCGACCGCG CCGAGGCGGC CAACCGCGCC AAGAGCGTGT TCCTGGCCAA CATGAGCCAC 
GAGATCCGCA CGCCGATGAA CGCCATCATC GGCCTGACGC ACCTGCTGCT GCGCGACAGC 
ACCGACACCG TGCAGCAGGA GCGCCTGGGC CAGGTGACGG GCGCCGCCCA CCACCTGCTC 
GACGTGATCA ACGACATCCT CGATCTCTCC AAGATCGAAT CCGGCAAGCT CGAACTCGAG 
CAGACCGACT TTCCGGTCGA CACCCTGCTG TCGCGCGCCT GCGCCCTGGT GGGCGAACGC 
GCCCGCGCCA AGGGGCTGGA ACTGGTGCTC GACAGCCATC GGCTGCCGAC CAGCCTGCGC 
GGCGACCCGA CCCGGCTGTC GCAGGCGCTG GTCAATCTGC TGAGCAACGC GGTGAAGTTC 
ACCGAACAGG GCTCGGTGGT GGTGCGCGCC GAGATCGTGC ACGAAGACCC CGACGGGCTG 
ACGGTGCGTT TCGAGGTCGA CGACACCGGC ATCGGCATGG CGCCCGAGCA GATCGGCCGC 
CTGTTCGCCG CCTTCGAGCA GGCCGACAGC TCGACCACCC GGCGCTTCGG CGGCACCGGA 
CTCGGGCTGG TCATCACACG CCACCTGGCC GAGCTGATGG GCGGCGAGGT CGGCGTCAGC 
AGCGCGCCGG GCGTGGGCAG CCGGTTCTGG TTCACCGCGC GGCTGCAGCG CGCGGCCGGC 
GGCGGCGCCC CGGCCGTCGT CGCGCCGGCG TGGTTGACGG GCATGCCGGC GCTGCTCGTC 
GAAGACCTGA GCGCCACGCG CCAGGCCGTC GGCGACATGC TGGGCGCGCT CGGCCTGCGC 
GTCGACACCG CCCAGGAGCG CCAGGAAGCG ATCGACAGGG CCGCCAGCGC AGCCGCAAGA 
GGCGCGCCCT ACCGGATCCT GCTGATCGAC GCCCGACTCG GCACCGAACA ACCGGCCGCC 
ACCGCGCTGC AGATGCACAC CCGGCTGGGC GCGCAGATGC CGCCCACGGT GCTGCTGGTC 
GAAGACGGCG ACCCGATCGA GCTGCCGGCG TCGCTCACGA CGCTGCACGC CGTCGCGCTG 
CCCAAGCCGG TCACCGCCTC GGCCCTGCTC GACACCTTGC TGCTGCTGCT GCGCGACGAC 
ATTGCCGCGC CCGCGCCACC GGCGCCGGCC GCACCGATGC CGATCGAAAC CCTGCTGCGC 
AGCCGGCATG CCGGCGCACG CGTGCTGCTG GCCGAGGACA ACGCCGTCAA CCGCGAGGTG 
GCGGTCGAGC TGCTGCAGGC CGCCGGCATG CAGGTCGACC TGGCGGTCGA TGGCCAGGAG 
GCGATCGACA TGTGCCAGCG CACCGCCTAC GCGCTGGTGC TGATGGACAT GCAGATGCCG 
CAGGTCGACG GCCTGGAAGC CACCCGCCGC ATCCGCGCCG ATGCGCGCCT GGCCGATCTG 
CCGATCCTGG CGATGACCGC CAACGCCTTC GGCGAAGACC GCGCCGCCTG CCTGGCTGCC 
GGCATGAACG ACCACATCGC CAAGCCGGTC GACCCGCAGG TGCTCTATTC GCATCTGCTG 
CACTGGCTGC CCCCGGTTGG CACCCTGGCC GCAGACCGGG CCGGGATCAC GACCGATCGG 
GCGGCCCTGC CCGGCACGGT CCCCGCCCGG GAAACGGCCG CGCCACCGCG CAACAGCACA 
CCGACCGAGC GGCAGACGCG GGTGCTGCAG CTGTTTGCCG AAACCGAAGC GCAGGCACTC 
GATCCGCTCG ACGACGAACT CGGCCGGGGC GACCTGGCAG CCGCGCGCCA CACCGTCCAC 
GGCCTGCGCG GCGCGGCCGG TGCGATCGGC GCCAGCGCCC TGCATGCCGA AGCGGCGTCA 
CTCGAGGCGG CGATCGTCGC CGGCCTGTCG ATCGACACGC TGCGCGGCTC GGCCGCGGCC 
TTGCGGACGT CGCTCGCCGG CTTTCTGGCG CAGATCGACA CCCAGGCCCC GGCCGGCGAG 
GCCCGTGCCG ACGAGACCGC GCCGGCAGTC GATCACACCG AGCGGGAGCG GGTGCTCGAT 
CACCTCGAGC GCCTGCTCGG CCAGGGCGAT TTCACCGCCG TGGCGGCCTG TCGAGAGGCC 
ACGGCGCTGC TGCGCAGCAC GTTCGGCAGG GCCGCGCTGG GCCTGGAGAG CCAGGTGCGC 
CGCTACGACT TCGCGCTTGC GCTGGCGACG CTGCGCAGTC TGCGTGCGGG GCTGGCCTGA 

 

Protein sequence

MSTAATQRSR RISWTLLYAA VAALWIYGSD ALLSALVSDP MALSQLSVLK GWLFVAVTSV 
ALYWILGKSG PATPAPIAAS TRVWPLRVMV VAGALTILGL IGLTITLSYE QQKQREGARI 
EAIAQLRADQ ISALLQDKKK DSAFVVNSAF FADLHTRWKD GGDAAAGVLL KRRLGEYRES 
NGFQSVLLLN DQFEPLITSG VHADTTSAAL QQTVQRAFAT GLLQVSDIHG ASSPADAQVL 
DLVAPLRLSG HPPRVVVVLR LRLSDFLYPT LDHWPIPSRS AATLLVRRVG DELIGVRGRN 
PIPLATSDSL AARVVRGELP YGRAVEAPDF RDKPVFGAVM PIKGTDWLLV ARIDRAELIE 
LAMKDAMWIG AAGLLALFMG GVAAYWLRER QSLQFELRAQ SQEHERLRAL ALLSAIADSS 
TDAIFAKDLQ GRYLLFNREA SRLTGMSADA VLGNDDHLLF PPEQAAKVMA NDAQVMRDGQ 
VGTFEEELDT PEGRATYMAT KGPLRDTQGQ VVGMFGISRD VTEKRRAEQA LARSEARYRA 
AFEQAAVGMS ETGLDGRWLH VNDRLCEITG YSRDELLQMR FQQVTLPEEL EPMQVLIERT 
LAGEQNGFSI EKRDRHRDGW LIWVHVWTQL VRDEHGAPQY FVSVIEDISL RKQTEAALAE 
SVELVQAVED SVLDHMAVLD ADGNIVAVNA AWERFAHDNT DPGNEGSERS DGRPAPRTGV 
GDNYLRVCEA ATGDEAAQAR AIHDGIRAVL RGEAQAYAVD YTCHTPTRKR WFHLAVTPLR 
TRSSGAVMVH TDITDRKREQ ELLRKSEARH RSMVNSLSEG IIIFDARGHV QACNPAAERM 
MGLTQAQMRG PRETGLAMWR PVQPNGRPMP RSKLPLLRTL TTGQPCHDVV LGGVTPDGKT 
RWLLANAEPV REPVSGELTG VVTSFTDISE RFVAEQQLRK LSLAVEQSPT GIVITDVQGN 
IEYVNQAYTL VSGYSRDELM GHNPSLAQSG LTPRQHYTDM WSTLAKGQSW QGEFINRRKS 
GETYDVFATV VPMRDGEGAV THYLAISEDI TERKRLSAEL DQHRHHLEEL VAERTQALQV 
AHQALADSEK FLRSLADNLP DRLTYWDTDL RCRFANKAFL KFHDLSEEQA IGRSSRHLLM 
DQASASEWIV RMSAAMSGAP QHFERARLGA DGRSRTERVH QIPDLKDGVV QGAFVLVSDI 
TGIKQAEQRL TQLNEELTFA RDRAEAANRA KSVFLANMSH EIRTPMNAII GLTHLLLRDS 
TDTVQQERLG QVTGAAHHLL DVINDILDLS KIESGKLELE QTDFPVDTLL SRACALVGER 
ARAKGLELVL DSHRLPTSLR GDPTRLSQAL VNLLSNAVKF TEQGSVVVRA EIVHEDPDGL 
TVRFEVDDTG IGMAPEQIGR LFAAFEQADS STTRRFGGTG LGLVITRHLA ELMGGEVGVS 
SAPGVGSRFW FTARLQRAAG GGAPAVVAPA WLTGMPALLV EDLSATRQAV GDMLGALGLR 
VDTAQERQEA IDRAASAAAR GAPYRILLID ARLGTEQPAA TALQMHTRLG AQMPPTVLLV 
EDGDPIELPA SLTTLHAVAL PKPVTASALL DTLLLLLRDD IAAPAPPAPA APMPIETLLR 
SRHAGARVLL AEDNAVNREV AVELLQAAGM QVDLAVDGQE AIDMCQRTAY ALVLMDMQMP 
QVDGLEATRR IRADARLADL PILAMTANAF GEDRAACLAA GMNDHIAKPV DPQVLYSHLL 
HWLPPVGTLA ADRAGITTDR AALPGTVPAR ETAAPPRNST PTERQTRVLQ LFAETEAQAL 
DPLDDELGRG DLAAARHTVH GLRGAAGAIG ASALHAEAAS LEAAIVAGLS IDTLRGSAAA 
LRTSLAGFLA QIDTQAPAGE ARADETAPAV DHTERERVLD HLERLLGQGD FTAVAACREA 
TALLRSTFGR AALGLESQVR RYDFALALAT LRSLRAGLA