| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2579 |
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| Symbol | |
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| ID | 6162256 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 2816708 |
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| End bp | 2817985 |
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| Gene Length | 1278 bp |
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| Protein Length | 425 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 641665354 |
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| Product | L-carnitine dehydratase/bile acid-inducible protein F |
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| Protein accession | YP_001791609 |
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| Protein GI | 171059260 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1804] Predicted acyl-CoA transferases/carnitine dehydratase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.000133596 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGGCCCCCG ATCCCGCTTC CTTTCGCAGC GACGAGCCGC AGCGACCGAA CCGTCCGCTC
GATGCCGCCG CCGCCGCGCC GGGGGCGTTG GCCGGCCTGA AGGTGCTCGA CCTGTCGCGC
GTCCTGGCCG GGCCGTGGGC CGGCCAGCTG CTGGCCGACC TGGGCGCCGA CGTCGTCAAG
GTGGAGCGCC CGGGCCTGGG CGACGACACC CGCACGTGGG GCCCGCCGTG GCTCAAGGAT
GCCGAGGGCC GCGACACGAG CGACGCGGCC TATTTCTTCT GTGCCAACCG CAACAAGCGC
TCGGTCGCGA TCGACCTGGC CGATCCGGCC GGCGCGGCGC TGGTGCGGCG CCTGGCCGCG
CAGGCCGACG TGGTGCTGGA GAACTTCAAG GTCGACGGAC TCAAGGCCTG CGGTCTTGAC
CACGCCACGT TGTGCGCGGC CCACCCGCGG CTGATCTACT GCTCGATCAC CGGCTTCGGC
CAGACCGGGC CGTATGCGCC GCGCGCGGGC TACGACTTCC TGATCCAGGG CATGGGCGGC
CTGATGAGCG TGACCGGCCG CGCCGATGGC GAGCAGGGTG CCGGCCCGCA GAAGGTGGGC
GTGGCGCTGA CCGACGTGAT GACCGGCCTG TACGCCACCA TCGGCGTGCT CGCCGCGCTG
GCGCACCGCG AGCGCAGCGG CTGCGGCCAG CACATCGACC TGGCGCTGCT CGACGTGCAG
GTGGCCGCGC TCGCCAACCA GACCGCCAAC CACCTGATCG GCGGCACGGT GCCGCGCCGC
ATGGGCAACG CGCACCCGAA CATCGTGCCG TACCAGGACT TCCCGACCGC CGACGGCGAC
ATGATCCTGG CGATCGGCAA CGACGGCCAG TTCGCGCGTT TCTGCGCCGT CGCCGGCCGG
CCCGAATGGG CCGCGGACGA ACGCTATGCG AGCAACGCCG CGCGGGTGGC GAACCGCGCC
GCGCTGATCC CGCTGCTGCG CCAGGCCACC GTGATGCGCA GCACCGCCGA GTGGATCGCC
GCGCTCGAAT CCGAGGCCGT GCCGTGTGGG CCGATCAACC GCATCGACCA GGTGTTTGCC
GACCCGCAGG TGATCGCGCG CGGCTTGCGG GTCGATCTGC CGCACCCGCT GGCGGGCAGC
GTGCCCGGCG TGGCCAACCC GATCCGCCTG TCGGCCACGC CGGTGACGTA TCGCAGCGCG
CCGCCGCGGC TCGGTCAGGA CACCGCCGAG GTGCTGGCCG ACTGGCTCGG CGAGGTGGCC
GCCGACGGCA GCGCCTGA
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| Protein sequence | MAPDPASFRS DEPQRPNRPL DAAAAAPGAL AGLKVLDLSR VLAGPWAGQL LADLGADVVK
VERPGLGDDT RTWGPPWLKD AEGRDTSDAA YFFCANRNKR SVAIDLADPA GAALVRRLAA
QADVVLENFK VDGLKACGLD HATLCAAHPR LIYCSITGFG QTGPYAPRAG YDFLIQGMGG
LMSVTGRADG EQGAGPQKVG VALTDVMTGL YATIGVLAAL AHRERSGCGQ HIDLALLDVQ
VAALANQTAN HLIGGTVPRR MGNAHPNIVP YQDFPTADGD MILAIGNDGQ FARFCAVAGR
PEWAADERYA SNAARVANRA ALIPLLRQAT VMRSTAEWIA ALESEAVPCG PINRIDQVFA
DPQVIARGLR VDLPHPLAGS VPGVANPIRL SATPVTYRSA PPRLGQDTAE VLADWLGEVA
ADGSA
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