| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2501 |
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| Symbol | |
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| ID | 6160680 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 2722967 |
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| End bp | 2724790 |
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| Gene Length | 1824 bp |
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| Protein Length | 607 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641665271 |
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| Product | SSS family solute/sodium (Na+) symporter |
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| Protein accession | YP_001791531 |
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| Protein GI | 171059182 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4147] Predicted symporter |
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| TIGRFAM ID | [TIGR00813] transporter, SSS family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.0000000632414 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAGCGGA TTTCTGCAAC TCGCAACGTC ACGGTGGCGC TGATCGCGCT GCTGGCCGGC
GCCGCGGCCT GGGCCGCAGG TGCTGACGTC GGCCAGGCCG CCAAGCAGGC GACCAACTGG
ACCGCCATCG GCATGTTCGC CGCCTTCGTG GCCGGCACGC TCTACATCAC AAAGTGGGCC
GCCGCCAAGA CCAAGTCGGC TGCCGACTTC TACACCGGCG GTGGCGGCAT CACCGGCTTC
CAGAACGGCC TGGCGATCGC CGGCGACTAC ATGTCGGCCG CTTCGTTCCT GGGCATCTCG
GCAGCCGTGA TGGCTTCCGG CTACGACGGC CTGATCTTCT CGATCGGCTT CCTGGTCGGC
TGGCCGGTCA TCACCTTCCT GATGGCCGAG CGCCTGCGCA ACCTCGGCAA GTTCACGTTT
GCCGACGTCG CCGGTTACCG CTTCAAGCCG GGCCCGATCC GCGCCTTCGC GGCCTCGGGC
ACGCTGGTCG TGGTGGCGTT CTACCTGATC GCGCAGATGG TCGGTGCCGG CCAGCTCATC
AAGCTGCTGT TCGGCCTGGA GTACTGGATG GCGGTGGTCA TCGTCGGCGC GCTGATGATG
ATCTACGTGC TGTTCGGCGG CATGACGGCC ACCACCTGGG TGCAGATCAT CAAGGCCTGC
CTGCTGCTGT CGGGCGTGAC CTTCATGGCC TTCATGGTGA TGTCGCAGTT CGGCTTCTCG
CCTGAAGCGC TGTTCGCCCA GGGCGTGGCG GTCAAGTCGG CCATCGCGGT CAATGCCAAG
GCAGCAGCCG TTGCCGCTGC CGCGGCCAGT GCGGCCGTGG CGACCACGCC CGAAGCCGTG
GCAGCCGCTG CTGCGGCCGT GACCAAGGCC GAAGCCATCG ATCCGGCCAA GGTCGGCCTG
GCCCTGATGG GCCCGGGCGG CTTCATCAAG GACCCGATCT CGGCGATCAG CTTCGGCATG
GCGCTGATGT TCGGCACCGC CGGCCTGCCG CACATCCTGA TGCGCTTCTT CACGGTGCCT
GATGCCAAGG AAGCCCGCAA GTCGGTGTTC TGGGCGACCA CCTGGATCGG CTACTTCTAC
ATCCTGATCT TCATCATCGG CTTCGGCGCG ATCACCCTGG TGCTGACCAA CCCCGAGTAC
TCGGATGTTG CCAAGGGCGT CATCCTGGGC GGCGCGGGCA CGGCCAACAT GGCGGCGGTG
CTGGTGGCCA AGGCGGTCGG CGGCAACGTG TTCTACGGCT TCATCTCGGC GGTGGCCTTC
GCGACCATCC TCGCGGTGGT GGCCGGCCTG ACGCTGTCGG GTGCCTCGGC GGTGTCGCAT
GACATCTATG CCACGCTGAT CAAGAAGGGC AAGGCAGACA GCGCAGCTGA ACTGAAGGTC
TCGCGCATCA CCACCCTGGC GCTCGGCGTC CTGGCGGTCA CGCTGGGCAT CGTGTTCGAG
AAGCAGAACA TCGCCTTCAT GGTGTCGCTG GCCTTCGCGA TCGCGGCCTC GGCCAACTTC
CCGGTGCTCT TCATGAGCGT GCTGTGGAAG GACTGCACCA CCAAGGGTGC GGTGATCGGC
GGCTTCCTGG GCCTGTTCTC GTCGGTCGCG CTGACCATCG TGTCGCCGTC GGTGTGGGAA
GCCACGCTCG GCAACCCGAA GGGCTCGGCC TGGTTCCCGT ACAGCTCGCC GGCGCTGTTC
TCGATGACGA TCGCCTTCGT CAGCATCTGG CTGATCTCGA TCCTCGACCG CAGCCCGCAG
GCGGCCAAGG AACGTGCCCT GTTCGACGCG CAGCAAGTGC GCAGCGAAAC CGGTCTCGGC
GCTGCCGGTG CCTCGGGTCA CTGA
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| Protein sequence | MKRISATRNV TVALIALLAG AAAWAAGADV GQAAKQATNW TAIGMFAAFV AGTLYITKWA
AAKTKSAADF YTGGGGITGF QNGLAIAGDY MSAASFLGIS AAVMASGYDG LIFSIGFLVG
WPVITFLMAE RLRNLGKFTF ADVAGYRFKP GPIRAFAASG TLVVVAFYLI AQMVGAGQLI
KLLFGLEYWM AVVIVGALMM IYVLFGGMTA TTWVQIIKAC LLLSGVTFMA FMVMSQFGFS
PEALFAQGVA VKSAIAVNAK AAAVAAAAAS AAVATTPEAV AAAAAAVTKA EAIDPAKVGL
ALMGPGGFIK DPISAISFGM ALMFGTAGLP HILMRFFTVP DAKEARKSVF WATTWIGYFY
ILIFIIGFGA ITLVLTNPEY SDVAKGVILG GAGTANMAAV LVAKAVGGNV FYGFISAVAF
ATILAVVAGL TLSGASAVSH DIYATLIKKG KADSAAELKV SRITTLALGV LAVTLGIVFE
KQNIAFMVSL AFAIAASANF PVLFMSVLWK DCTTKGAVIG GFLGLFSSVA LTIVSPSVWE
ATLGNPKGSA WFPYSSPALF SMTIAFVSIW LISILDRSPQ AAKERALFDA QQVRSETGLG
AAGASGH
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