Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_2490 |
Symbol | |
ID | 6160983 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 2713824 |
End bp | 2714486 |
Gene Length | 663 bp |
Protein Length | 220 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 641665260 |
Product | 3-oxoacid CoA-transferase, A subunit |
Protein accession | YP_001791520 |
Protein GI | 171059171 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1788] Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit |
TIGRFAM ID | [TIGR02429] 3-oxoacid CoA-transferase, A subunit |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.0000000124934 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | TTGAGCAAGA CCATCAAGGC GGCAGACGCC GTGGCCCGCA TCCCCGACGG GGCGGTGCTG ATGATCGGCG GCTTCATGGG CGTGGGCACC CCCCATCGCC TGGTCGACGA ACTGGTGCGC CAGGGCAAGC GCGACCTGAC CGTGATCGCC AACGACACCG CGCGCCCCGG CGTCGGCATC GGCAAACTGA TCAGCGCCGG GCTGGTGAAG CGGGCGATCG TCAGCCACAT CGGCACCAAC CCCGAGACCC AGGCGCAGAT GATCGCCGGC AAGCTCGAGG TCGACCTGGT GCCCCAGGGC ACGCTGGCCG AGCGCGTGCG CGCCGGCGGC TACGGGCTGG GCGGCGTGCT CACGCCCACC GGCGTGGGCA CGGTGGTGGC CGACGGCAAG CGCACGCTCG AGATCGAGGG CCGCCTGTTC CTGCTGGAGC TGCCGCTGCG GGCCGATTTC GCGCTCGTCA ACGCCCGCCA GGCCGACCAC ATCGGCAACC TCGCCTACGC GCTGACGGCG CGCAACTTCA ACCCGCTGAT CGCGATGGCC GCCGACGTCG TGCTGGCCGA GCCGCAGGAG ATCGTGCCGG TCGGCGTGAT CCCGCCCGAC GCCGTCATGA CGCCGTCGGT GGTCGTCACC CACATCATCG CCAAGGAGTC CGCACATGGA TGA
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Protein sequence | MSKTIKAADA VARIPDGAVL MIGGFMGVGT PHRLVDELVR QGKRDLTVIA NDTARPGVGI GKLISAGLVK RAIVSHIGTN PETQAQMIAG KLEVDLVPQG TLAERVRAGG YGLGGVLTPT GVGTVVADGK RTLEIEGRLF LLELPLRADF ALVNARQADH IGNLAYALTA RNFNPLIAMA ADVVLAEPQE IVPVGVIPPD AVMTPSVVVT HIIAKESAHG
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