Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_2486 |
Symbol | |
ID | 6160648 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 2708431 |
End bp | 2709834 |
Gene Length | 1404 bp |
Protein Length | 467 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 641665256 |
Product | beta-lactamase domain-containing protein |
Protein accession | YP_001791516 |
Protein GI | 171059167 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1236] Predicted exonuclease of the beta-lactamase fold involved in RNA processing |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.000000000215978 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGAGACTGA GCTTCATCGG CGCCGCGCAG GAAGTCACCG GATCGTGTTT TCTCGTCGAG ACCGACGAGG TGCGCTTTCT GGTCGACTGC GGCATGTTCC AGGGCGGGCG CGAGGTCCGC GAGCGCAATT TCCAGGGCTG GCCGTTCGAT CCGCGCACGC TCGACTTCGT GCTGCTGACA CACGCGCACA TCGACCACAG CGGCCTGCTG CCACGCCTGT GCGCGCTCGG TTTCAAGGGC CCGATCCACA CCACCACGGC CACCGCGGAC CTGCTGTCGG TGATGCTGCT CGACAGCGCC TTCATCCAGG AGTCCGACTG GACCCGCGCC CAGCGCAAGC GCGGACGCAC GCCCCGCAAC GGCGCGGCGC CGGCCGAGCT GCTGTACACG GTGGCACAGG CCGAGGCCTG CCTGGCGCAG GTGCGCGGCG TCGCCTACGA CACCGAGCTC AAGCCGCACG CCGACGTGCG CTGCCGCTTC CGCGACGCCG GCCACATCCT CGGCTCGGCG ATCGCCGAGA TCTGGCTCGA CGAGCCCGGC CGCACGCGCA AGCTGGTGTT CTCGGGCGAC CTCGGCCAGC CCGGCCGGCC GATCGTGCGC GACCCGACGC CGATCGCCGA CGCCGACGTG CTGGTGGTCG AGTCGACCTA CGGCAACCGC CTGCACCGGC CGATGCAGGA AACCGTCGAC GAGCTGGTGC GGGTGATCGA GGACGTGCTG CGCCGCCGCC AGGGCAACGT CATCATCCCG GCCTTCGCGC TCGGGCGCAC GCAGGAGGTG CTGTACCTGC TGACCGACCT GTGCCGCAGC GGCCGGCTGC CACCGCTGCA GGTGTTCGTC GATTCGCCGA TGGCCGACAA GGTGACGGCC ATCACCGAAA AGCACCCCGA GTTCCTCGAC GACGAGACCC GGGCGCAGCT GTCGCAGCGC CACGCACGGC AGGGGCCGCT GCACCTGCGC TTCACCCAGA GCGTCGAGGA ATCGATCGAG CTGAACCGCA TCAAGGCCGG CGCCATCATC ATCGCCGCCA GCGGCATGTG CGACGCCGGG CGCATCAAGC ACCACCTGCG CCACCACCTC GGCCGCCCGG AGTGCGCCGT CGTCATCATC GGTTTCCAGG CCGTCGGCAC GCTCGGGCGG CGGCTGGTGG ACGGCGACAA GCAGGTGCGC ATCTTCGGCG AGGAGCTGAA GGTCCGCGCC AGCGTGCACA CCATCGGCGG CCTGTCGGCC CACGCCGACC AGGCCGCGCT GCTGGGCTGG CTGCGCGGCT TCAGGCGCGC GCCGGCGCAG ACCTTCGTGG TGCACGGCGA GTCGGCCACC GCCTGCGGTT TCGCCGACAC CATCGCCGCC GAGCTGGGCT GGCGCGTCGA GGCGCCGCCA GCGGGCGCCC GGATCGAGCT CTGA
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Protein sequence | MRLSFIGAAQ EVTGSCFLVE TDEVRFLVDC GMFQGGREVR ERNFQGWPFD PRTLDFVLLT HAHIDHSGLL PRLCALGFKG PIHTTTATAD LLSVMLLDSA FIQESDWTRA QRKRGRTPRN GAAPAELLYT VAQAEACLAQ VRGVAYDTEL KPHADVRCRF RDAGHILGSA IAEIWLDEPG RTRKLVFSGD LGQPGRPIVR DPTPIADADV LVVESTYGNR LHRPMQETVD ELVRVIEDVL RRRQGNVIIP AFALGRTQEV LYLLTDLCRS GRLPPLQVFV DSPMADKVTA ITEKHPEFLD DETRAQLSQR HARQGPLHLR FTQSVEESIE LNRIKAGAII IAASGMCDAG RIKHHLRHHL GRPECAVVII GFQAVGTLGR RLVDGDKQVR IFGEELKVRA SVHTIGGLSA HADQAALLGW LRGFRRAPAQ TFVVHGESAT ACGFADTIAA ELGWRVEAPP AGARIEL
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