Gene Lcho_2436 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_2436 
Symbol 
ID6163642 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp2645587 
End bp2646318 
Gene Length732 bp 
Protein Length243 aa 
Translation table11 
GC content70% 
IMG OID641665206 
ProductTetR family transcriptional regulator 
Protein accessionYP_001791466 
Protein GI171059117 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value0.747053 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCCTGCCA CACCCCCGCC TTCGCCAACA GCCGTTTCGA TTTCTGCCGC CGCGGCGTCC 
GACGACACCC GCGCGATCGA AACACCCGTC GCCCCCGCCC ACCAGCGCCG CAAGGCCGAG
CGCCCGCACG AGCTGGTCGA TGCCGCGCTG GACCTGTTTG TCGAGAAGGG TTTCGCCGCC
ACCCGCATCG ACGAGGTGGC GCGCCGCGCG GGTGTCTCCA AGGGCACGCT CTACCTCTAC
TACGCCAGCA AGGAAGAGCT GCTGAAGGCG GTGATCCGCG AGCGGCTGTC GACCGAGATC
GCCGCCGCCG CGCTGACCGT GGCCGAGCAC CGCGGCAGCA GTGCCGACCT GCTGACCGGC
CCGCTGGCGG CCTGGTGGGC GCGCGTGATC GCCAGCCAGG CGTCGGGCGT GTTCAAGCTC
ATCATCACCG AGGTGCGCAA CTTCCCCGAG ATCGCCGAGT TCTATCGCCA CGAGGTGATC
GAGCCCGGCC ACGCGCTGAT CGGCCGGATC CTGCAGCGCG GCATCGACGG CGGCGAGTTC
CGGCCCGTCG ACATCGACGC CACGGTGCAT TCGCTGCTGC TGCCGATGGT GATGCTGTGC
ATCCACCGCC ACTCGCTGGG CGTCTGCCAG CCCAACGAGG CGCTGCAGGA CCCGCTCGTG
TTCATCCAGC ACCACATGCA CCTGATCCTG CGCGGGCTGG CCCGGCCGGA CCAGGCGCCG
AACGCAAGCT GA
 
Protein sequence
MPATPPPSPT AVSISAAAAS DDTRAIETPV APAHQRRKAE RPHELVDAAL DLFVEKGFAA 
TRIDEVARRA GVSKGTLYLY YASKEELLKA VIRERLSTEI AAAALTVAEH RGSSADLLTG
PLAAWWARVI ASQASGVFKL IITEVRNFPE IAEFYRHEVI EPGHALIGRI LQRGIDGGEF
RPVDIDATVH SLLLPMVMLC IHRHSLGVCQ PNEALQDPLV FIQHHMHLIL RGLARPDQAP
NAS