| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2421 |
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| Symbol | |
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| ID | 6164130 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 2628250 |
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| End bp | 2629188 |
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| Gene Length | 939 bp |
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| Protein Length | 312 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641665191 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_001791451 |
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| Protein GI | 171059102 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.324279 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCATCA ACTTCGACCT CAACGATCTG CAGGCCTTTC GCGCGGTGGC CGAGATCGGC
AACTTCCGCA AGGCCGCCGA GGCGATCAGC ATCTCGCAGC CGGCCTTCAG CCGGCGCATC
GACAAGCTCG AAGAGGCGCT CGGCGTGCGC CTGCTCGACC GCACCACGCG GCGCGTCAGC
CTCACGGCCG TGGGGCGCGA CTTCGCGCGC AAGGTGACGC TGCTGCTCGA CGAGCTGGAT
CAGACGCTGC TCGGCATCCG CGGCGTGGCC GCCACGCGCA TGGGCGAGGT CACGATCGCC
TGCGTGCCGT CGACGGTCTA CTACTACCTC TCGCAGGTGA TCCGGCGCTA CCACGAGCGC
TTTCCGAAGA TCCGCGTCAA GGTGTTCGAT GCCGGCGCCA ACGAGGTGCT CGACGCGGTG
GCGCGCAGCC AGGCCGATTT CGGCCTCAAC TTCATCGGCA GCCAGGAGCC CGACATCGAG
TTCCGCTCGC TGCTCGAGGA GCGTTTCGTC GCCGCCTGCC GGCGCGACCA TCCGCTGGCG
CGCAAGCGCA GCGTGAGCTG GAGCGAACTC GGCGCCTACG ACTTCATCGC CGTCAGCAAG
ACCTCGGGCA ACCGCCTGCT GATCGACCAG GCGCTGGCCA ACGTGGCGGG CAGCCCGCAA
GGCGTGTACG AGGCCCAGCA CGTGACCACG CTGCTCGGCC TGGTCGAGGC GGGCCTGGGC
GTGGCGGCAG TGCCTTCGCT GGCGATGCCG GGCAAGGACC ACCCGACGCT GGTGAGCGTG
CCGCTGGTCG AGCCGGTGGT GACGCGCCAG GTCGGGCTGA TCCGGCGCAA GGGCCGTTCG
CTGTCACCGG CGGCGCAGCA GCTGTACGAC TTCTTTGCCG AGATGAAAGG CAGCCGCGCG
GGCCGGCCGG CGGCCAAGGC GCGCACGGCT GCGGCCTGA
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| Protein sequence | MAINFDLNDL QAFRAVAEIG NFRKAAEAIS ISQPAFSRRI DKLEEALGVR LLDRTTRRVS
LTAVGRDFAR KVTLLLDELD QTLLGIRGVA ATRMGEVTIA CVPSTVYYYL SQVIRRYHER
FPKIRVKVFD AGANEVLDAV ARSQADFGLN FIGSQEPDIE FRSLLEERFV AACRRDHPLA
RKRSVSWSEL GAYDFIAVSK TSGNRLLIDQ ALANVAGSPQ GVYEAQHVTT LLGLVEAGLG
VAAVPSLAMP GKDHPTLVSV PLVEPVVTRQ VGLIRRKGRS LSPAAQQLYD FFAEMKGSRA
GRPAAKARTA AA
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