Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_2418 |
Symbol | |
ID | 6163792 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 2624832 |
End bp | 2626178 |
Gene Length | 1347 bp |
Protein Length | 448 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641665188 |
Product | fumarate lyase |
Protein accession | YP_001791448 |
Protein GI | 171059099 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG0015] Adenylosuccinate lyase |
TIGRFAM ID | [TIGR02426] 3-carboxy-cis,cis-muconate cycloisomerase |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 0.259458 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCTCCA CGATCATCGA CTCCGCCATC TTCCAGGGCA TCTTCAGCAG CGACGCGATG CGCCAGGTGT GGTCGGACGA AAACCGCACG CAGAAGTACC TCGACATCGA ACGCGCCCTC GCCGTCGTGC AGGGCCGGCT CGGCCTGATC CCGCAGGAGG CGGCCGACGA GATCGTGAGC CACTGCCACC TCGACCAGAT CGACCTGGTG AAGCTGCGCG CGCAGACCGA GCGCATCGGC TACCCGATCC TGGGCGTGGT GTCGCAGCTC AACGCGCTGT GCCGCGACCA GCTCGGCGAG TACTGCCACT GGGGTGCGAC CACGCAGGAC ATCACCGACA CCGCCACCGT GCTGCAGATC CGCGAGGCGC TGACGCTGGT CGACGACGAA CTGGCGGCGA TCGCGACGGC GATGGCCAGG CTGGCGCGCG AACACCGCCT GACGCCGGTG ATCGGCCGCA GCAACCTGCA GCAGGCGATC CCCGTGACCT TCGGCTACAA GATCGCCGGC CTGCTGTCGG CCGTGCTGCG GCACCGCGAG CGCATCGCGC AACTGCGTGA ACGCGTGCTG GTGGGCGAGT TCGCCGGGGC GGCCGGCACG CTGGCTTCGC TCGAATCAGG CGCCATGGAA ACGCAGGCCG GCCTGTGCGC CGAACTCGGC CTGGCGCAGC CGGTGATCGC CTGGCACACC ATCCGCGACA ACATCGCCGA GGTCGGCGCC GTGCTCGGCC TGATCGGCGG CACGCTGGGC AAGCTCAGCA TGGACGTCAA GCTGATGATG CAGACCGAGG TCGGCGAAGT GCAGGAGCCC TACTACCACG GCCGTGGCAG CAGCAGCACG ATGCCGCAGA AGCGCAACCC GATCAGCAGC GCCTACGTGC ACGGCGCCAT CAGCGTGCTG CGCCAGCACG CCGCGGCGCT GATGGACGCG ATGGTGGCCG ACCACGAACG CAGCACCGGC CCGTGGCAGA TCGAGTGGAT CGTGCTGCCC GAGGCCTTCT GCCTGCTGGC CGGCGCGCTC AAGCAGAGCC GCGTCATCGT CGAGGGCCTG GAGGTCGATG CCGACGCCAT GATGCGCAAC ATCGAGATGA CCGGCGGCCT GGTGATGAGC GAGGCGGTGA TGATGGGCCT GGGCCCGTTC ATCGGCCGCG AGTACGCCCA CGACCTGGTC TACGACCTGT GCCGCGAATC GCTGGCGAAG AAGGCGCCGC TGCTCGACCT GCTGGCTGCG CATCCCGAGA TCAACCGGCA CGTCGACCGT GCGGCGCTGG CGCGCATGCT GGACCCGGCC AACTACCTCG GCCAGTCCGG CGTGATGGTC GATCGGGTGC TGACGCGCAT GGGCTGA
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Protein sequence | MASTIIDSAI FQGIFSSDAM RQVWSDENRT QKYLDIERAL AVVQGRLGLI PQEAADEIVS HCHLDQIDLV KLRAQTERIG YPILGVVSQL NALCRDQLGE YCHWGATTQD ITDTATVLQI REALTLVDDE LAAIATAMAR LAREHRLTPV IGRSNLQQAI PVTFGYKIAG LLSAVLRHRE RIAQLRERVL VGEFAGAAGT LASLESGAME TQAGLCAELG LAQPVIAWHT IRDNIAEVGA VLGLIGGTLG KLSMDVKLMM QTEVGEVQEP YYHGRGSSST MPQKRNPISS AYVHGAISVL RQHAAALMDA MVADHERSTG PWQIEWIVLP EAFCLLAGAL KQSRVIVEGL EVDADAMMRN IEMTGGLVMS EAVMMGLGPF IGREYAHDLV YDLCRESLAK KAPLLDLLAA HPEINRHVDR AALARMLDPA NYLGQSGVMV DRVLTRMG
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