| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2398 |
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| Symbol | |
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| ID | 6160888 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 2603815 |
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| End bp | 2605071 |
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| Gene Length | 1257 bp |
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| Protein Length | 418 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641665168 |
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| Product | LolC/E family lipoprotein releasing system, transmembrane protein |
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| Protein accession | YP_001791428 |
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| Protein GI | 171059079 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
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| TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACTGGC CCTATGAAAT GCGCATCGGT TGGCGCTACA CCCGAGCCGG TCGCGGTGGA
CGTCGCAACG GCTTCATCTC CTTCATCTCG GGCGTGTCGA TGCTCGGCAT CGCGCTCGGC
GTGGCGGCGC TGATCATCGT GCTCAGCGTG ATGAACGGCT TCCAGAAGGA AGTGCGCGAC
CGCATGCTGA GCGTGATCGC GCACGTCGAG GTCTACGGCA ACGGCGGCGA GCCGCTGGCC
GACTGGCAGG CGCTGGCGGC ACAACTGCAG CGCCATCCGC AGGTCAAGGC GACGGCCCCT
TTCGTGGCTG CGCAGGCGCT GATCGCCCGC GGCGACGACA TGCGCGGCGT GCTGGTGCGC
GGCATCGATC CGGCCGAAGA GGCCGATGTC ACCGCGCTGG GCGCGCAGCT CAAGGACGGC
GTGCTCAAGC GCCTGCAGCC CGGCAGCTGG GGCGTCGTGC TCGGCGCGCA GCTGGCGCGC
AGCCTGGGCG TGCAGGAGGG CGACAGCATC ACGCTCGTCA CCCCCAGCGG CCAGACCACG
CCGGCCGGCG TGGTGCCGCG CTTGAAGCAG GTGACGGTGG CGGGCGTGTT CAACGCCGGC
CACTACGAAT ACGACAGCGG CATGGCGCTG ATGCACATCG ACGACGCCGC GCGGCTGTTC
CGCACCGGCG GCCCGCAGGG CGTGCAGCTG CGGCTGGCCG ACCTGCACCA GGCCCGCACG
GTGGCGGCCG ACCTGGTCGG CGGCCTCGGC CCGGCCTATC AGGTGCGCGA CTGGACCCGC
ACCAACGCGA CCTGGTTCGA CGCGGTGCAG ATCGAGAAAC GCATGATGAG CCTGATCCTG
ACGCTGATCG TCGCGGTGGC GGCCTTCAAC CTGGTGTCGA CGCTGGTGAT GACGGTGACC
GACAAGCGCG CCGACATCGC CATCCTGCGC ACGCTGGGCG CGAGCCCGCG CTCGGTGATG
GGCATCTTCA TGGTGCAGGG CGCCACCTCG GGCGTGATCG GCACCTTCGG CGGGCTGCTG
CTGGGGCTGG CGGTGGCGCT CAACATCGAC GTCATCGTGC CGGCGATCGA GCGGCTGTTG
AACATCAGCT TCCTGCCCGG CAACATCTAC CTCATCACGC GCATGCCCAG CGACCCGCAG
AGCGCCGACA TCATGCCGAT CGTGATCACC TCGCTGGTGC TGGCCTTCCT GGCCACGCTG
TATCCGAGCT GGCGCGCCAG CCGTGTCAAC CCGGCCGAGG CGCTGCGTTA TGAATGA
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| Protein sequence | MNWPYEMRIG WRYTRAGRGG RRNGFISFIS GVSMLGIALG VAALIIVLSV MNGFQKEVRD
RMLSVIAHVE VYGNGGEPLA DWQALAAQLQ RHPQVKATAP FVAAQALIAR GDDMRGVLVR
GIDPAEEADV TALGAQLKDG VLKRLQPGSW GVVLGAQLAR SLGVQEGDSI TLVTPSGQTT
PAGVVPRLKQ VTVAGVFNAG HYEYDSGMAL MHIDDAARLF RTGGPQGVQL RLADLHQART
VAADLVGGLG PAYQVRDWTR TNATWFDAVQ IEKRMMSLIL TLIVAVAAFN LVSTLVMTVT
DKRADIAILR TLGASPRSVM GIFMVQGATS GVIGTFGGLL LGLAVALNID VIVPAIERLL
NISFLPGNIY LITRMPSDPQ SADIMPIVIT SLVLAFLATL YPSWRASRVN PAEALRYE
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