| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2375 |
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| Symbol | |
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| ID | 6160045 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 2581298 |
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| End bp | 2582095 |
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| Gene Length | 798 bp |
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| Protein Length | 265 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641665144 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001791405 |
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| Protein GI | 171059056 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 52 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAGCA CCCCCGTTAC GAACCAGCCC GTCGCCGTCG TCACCGGCGG CGCCCGCGGC
ATCGGCCTGG CCATCGCGCA CTGGTTCCTG GCGCACGAGT ACCGCGTCGC GCTGTGGGAC
ATCGACGCCG AGACGCTGGG CCGCACCGCC GGCGAACTGA ACGACCCGGC GCGCGTGCTG
GCGATCCACT GCGACGTCTC GCAGCCCGAT CAGGTCGACG CCGCCACCGC GCGCGTGGTC
GACACCTTCG GCCGCATCGA CGCGCTGGTT AACAACGCCG GCGTGGCGGT GTTCAAGCCG
ATCAACCAGA CCACCTTCGA CGACTGGCGG CACGTGCTCG GCACCAACCT CGACGGCCCC
TTCCTGTGCA CGCAGGCGGT GGCGCCGGTG ATGCGCCGCA ACGGCGGCGG CGCGGTGGTC
AACATCGCCT CGATCTCGGG CCTGCGCGCC AGCACGCTGC GGGTGGCCTA CGGCACCAGC
AAGGCCGCGC TGATCCACCT GACCAAGCAG CACGCCACCG AACTCGGCAC GGTCGGCATC
CGCTGCAACG TGGTGGCGCC CGGCCCGGTC GAGACCGAGA TGGCCAAGCT GGTGCACAGC
GTGGCGATCC GCTCCGACTA CCACGACGTG ATCCCGCTCG AACGCTACGG CACCACCGAG
GAGATCGCCA ACGTGGTGGG TTTCCTGTGC AGCCCGGCGG CCAGCTACGT CAACGGCCAG
GTGATCGCGG TGGACGGCGG TTTCGACGCT GCCGGCGTGG GCCTGCCCAC CTTGCGCAAG
ACTGGCGCAC TGGGCTGA
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| Protein sequence | MSSTPVTNQP VAVVTGGARG IGLAIAHWFL AHEYRVALWD IDAETLGRTA GELNDPARVL
AIHCDVSQPD QVDAATARVV DTFGRIDALV NNAGVAVFKP INQTTFDDWR HVLGTNLDGP
FLCTQAVAPV MRRNGGGAVV NIASISGLRA STLRVAYGTS KAALIHLTKQ HATELGTVGI
RCNVVAPGPV ETEMAKLVHS VAIRSDYHDV IPLERYGTTE EIANVVGFLC SPAASYVNGQ
VIAVDGGFDA AGVGLPTLRK TGALG
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