Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_2372 |
Symbol | |
ID | 6160042 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 2577503 |
End bp | 2578519 |
Gene Length | 1017 bp |
Protein Length | 338 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 641665141 |
Product | TRAP dicarboxylate transporter, DctP subunit |
Protein accession | YP_001791402 |
Protein GI | 171059053 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 65 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAAATCA CCCGCCGCAC CCTGCTGGCC GGCACCGGCG CCCTCGCGCT GCCCGGCGTC GCCACCCACG CCCTGGCGCA GAACAAGGCC GAGTTCACGC TGAAATACGC CAACAACCTG CCCATCACGC ACCCGATGAA CGTGCGCGCC ACCGAGATGG CGGCGGCGAT CCTGGCCGAA TCGAAGGGCC GGGTCGACCT GAAGGTGTTC CCGAGCAGCC AGCTGGGCAC CGACACCGAC ATGCTGTCGC AGATCCGCTC GGGCGCGATC GACTACTTCA CGCTCTCGCC GCTGATCCTC GGCACGCTGG TGCCGTCGGC GCAGATCAGC GGCGTGGGCT TCGCGTTCAA GGACTACAAC CAGGTCTGGG CCGCGATGGA CGGTGACCTG GGCGCCCACG TGCGCAAGGA GATCGCCGCC AGGTCGACGA TGTTCGCGTT CGACAAGATC TGGGACAACG GCTACCGCCA GATGACCAGC AGCGCGCGCG CCATCACCAA GCCCGAAGAC CTCAAGGGCA TGAAGATGCG CGTGCCGCCG AGCCCGTTCT GGGTCTCGAT GTTCAAGGCC TTCGAGGCGT CGCCGGCCAC CATCAACTTC GCCGAGGTCT ACACCGCCCT GCAGACCAAG ATCGTCGACG GCCAGGAGAA CCCGCTGGCG ATCATCGCCA CCGCCAAGCT GTTCGAGGTG CAGCAGTTCT GCTCGATCAC CAACCACATG TGGGACGGTT TCTGGTTCCT GGCCAACAAG AAGTCCTTCG AGCGCCTGCC GGCCGATCTG CAGGAGATCG TGACGCGCAA CGTCAACAAG GCCGGCCTGA ACCAGCGCGA CGACGTGCGC AAGCTCAACG ACTCGCTGCT GGGCGAGCTC AAGGCCAAGG GCATGGCGAT CAACACCACC GACGCCGAGC TGTTCCGCGC CAAGCTGCGC GCGGCCGGTT TCTACGCCGA GTGGCACAAG AAGTTCGGCG ACGAAGCCTG GGCGGTGCTC GAGAAGTACA CCGGCAAGCT GGTCTGA
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Protein sequence | MQITRRTLLA GTGALALPGV ATHALAQNKA EFTLKYANNL PITHPMNVRA TEMAAAILAE SKGRVDLKVF PSSQLGTDTD MLSQIRSGAI DYFTLSPLIL GTLVPSAQIS GVGFAFKDYN QVWAAMDGDL GAHVRKEIAA RSTMFAFDKI WDNGYRQMTS SARAITKPED LKGMKMRVPP SPFWVSMFKA FEASPATINF AEVYTALQTK IVDGQENPLA IIATAKLFEV QQFCSITNHM WDGFWFLANK KSFERLPADL QEIVTRNVNK AGLNQRDDVR KLNDSLLGEL KAKGMAINTT DAELFRAKLR AAGFYAEWHK KFGDEAWAVL EKYTGKLV
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