Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_2144 |
Symbol | |
ID | 6163886 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 2345211 |
End bp | 2346017 |
Gene Length | 807 bp |
Protein Length | 268 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 641664912 |
Product | carboxymuconolactone decarboxylase |
Protein accession | YP_001791175 |
Protein GI | 171058826 |
COG category | [S] Function unknown |
COG ID | [COG0599] Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [COG1917] Uncharacterized conserved protein, contains double-stranded beta-helix domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.000390984 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCATCGTT GGATCGTTGC CGCATTGGCC GCGGGGGTGC TGTGCCCCGC AGGCGCAGCC GAGCCGGAAC TCCAGGTCTC CCGGGCCGGC GCACGCACGG CCCGCCCGGC ACCGGCCGCG CACTTCAGCG GTCAGGCGAT GGTGGACATG CGCCATGTGC CCAGCGGCGC GGCGCGAGCC TCCGTGGGCT CGGTGAGCTT CTCGCCGGGG GTTCGTACCG CCTGGCACAC GCACCCGCTG GGGCAGACGC TGGTGGTCAC GGCCGGCGCT GGGCAAGTCC AGCGCTGGGG TGGTCCGGTG GTCGAGATGC GGGTCGGTGA CGTGATCCAC ATCCCGCCGC TGCTCAAGCA TTGGCACGGT GCCGCACCAG GGGGCGCGAT GACCCATCTG GCCATCACCG AGGCGCAGGA CGGCTCGACC GTCCAATGGC TGGAGGCCGT GGCCGAGGCC CCAGGCGCAC CGGCACCCGC CACCGCCGCA TCAGCGGCGC CATCGCGCGC ACAACGCCTG ATGGGCGATG TGGCACCCAA GTTGGCCCAA CTGACCGACG AAGTCTTGTT GGGCGATGTC TGGACCCGGC CCGGCCTGTC GCCCCGGGAC CGCAGCCTCG TCACCGTGAG CGCGCTGATC GCGTTGAACA GGCCTGAGCA ACTGCGCTCG CACCTCGGGC TCGGGCTGAA CAACGGCCTG ACCCGCGACG AGATCTCCGA AGCCCTCACC CACCTGGCGT TCTACGCCGG TTGGCCCAAT GCCATCACGG CCGCTGGTGT GGCGCGCGAG GTGTTCGCCG CTGCGCCAAA ACCGTGA
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Protein sequence | MHRWIVAALA AGVLCPAGAA EPELQVSRAG ARTARPAPAA HFSGQAMVDM RHVPSGAARA SVGSVSFSPG VRTAWHTHPL GQTLVVTAGA GQVQRWGGPV VEMRVGDVIH IPPLLKHWHG AAPGGAMTHL AITEAQDGST VQWLEAVAEA PGAPAPATAA SAAPSRAQRL MGDVAPKLAQ LTDEVLLGDV WTRPGLSPRD RSLVTVSALI ALNRPEQLRS HLGLGLNNGL TRDEISEALT HLAFYAGWPN AITAAGVARE VFAAAPKP
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